Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC026367.3-201ENST00000619032 590 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXD4P09016 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
HOXD4P09016 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXD4P09016 AL731566.1-201ENST00000620490 1937 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXD4P09016 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
HOXD4P09016 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXD4P09016 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.86□□□□□ -1.63
HOXD4P09016 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
HOXD4P09016 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
HOXD4P09016 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 HSPA8P18-201ENST00000439846 1928 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXD4P09016 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
HOXD4P09016 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 MIR133B-201ENST00000362210 119 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
HOXD4P09016 AL589994.1-201ENST00000404962 340 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 AC096921.1-201ENST00000411661 375 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 GSTM5P1-201ENST00000434751 660 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXD4P09016 AL389915.2-201ENST00000454576 441 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 SEPT7P3-201ENST00000455017 621 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXD4P09016 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXD4P09016 AC109462.1-201ENST00000491087 368 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXD4P09016 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXD4P09016 AP002981.1-201ENST00000517692 975 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXD4P09016 AC122688.1-201ENST00000541494 223 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
HOXD4P09016 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXD4P09016 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXD4P09016 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXD4P09016 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXD4P09016 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXD4P09016 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXD4P09016 BNIP3P7-201ENST00000605641 516 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXD4P09016 AC133644.2-201ENST00000608142 540 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 AL356752.1-201ENST00000615844 593 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 AP002505.2-201ENST00000623585 696 ntBASIC4.86□□□□□ -1.63
HOXD4P09016 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXD4P09016 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXD4P09016 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXD4P09016 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
HOXD4P09016 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC004817.4-201ENST00000602396 3625 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
HOXD4P09016 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HOXD4P09016 AC083843.2-201ENST00000568248 6253 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXD4P09016 AL360270.2-201ENST00000562952 5985 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 OR5T3-201ENST00000303059 1023 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HOXD4P09016 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXD4P09016 AL445213.1-201ENST00000412589 747 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXD4P09016 RPL7P56-201ENST00000429441 717 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 FABP7P2-201ENST00000429946 379 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXD4P09016 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXD4P09016 RPL7P61-201ENST00000451721 751 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXD4P09016 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXD4P09016 RPL35AP28-201ENST00000459730 331 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXD4P09016 RPL7P6-201ENST00000480903 738 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXD4P09016 CCNHP1-201ENST00000513311 678 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 RNU4-18P-201ENST00000516751 149 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC067805.1-201ENST00000559344 470 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 AC127024.5-201ENST00000580085 462 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXD4P09016 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXD4P09016 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXD4P09016 AC069307.1-201ENST00000602820 447 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms