Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 AC006210.2-201ENST00000367074 1545 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 AL672167.2-201ENST00000377164 879 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 RNU1-74P-201ENST00000384108 171 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 MIR589-201ENST00000385238 99 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 DUTP5-201ENST00000406790 469 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 RPS4XP16-201ENST00000427198 791 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 MTCO1P51-201ENST00000427672 1060 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 NOP56P2-201ENST00000447491 769 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 CBX1P2-201ENST00000453841 458 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 AL389915.2-201ENST00000454576 441 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 RN7SL222P-201ENST00000476452 299 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 AC006499.3-201ENST00000506077 748 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 NPM1P52-201ENST00000518264 846 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 RN7SL708P-201ENST00000580952 299 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 MIR3936-201ENST00000584304 110 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 AL159169.2-201ENST00000610061 1269 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 AP005131.7-201ENST00000610087 611 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 AC135068.12-201ENST00000637370 931 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
VPS35Q96QK1 MUC2-202ENST00000613187 4845 ntBASIC5.2□□□□□ -1.58
VPS35Q96QK1 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS35Q96QK1 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 OR9K1P-201ENST00000326513 941 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 U3.7-201ENST00000363668 216 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 RNA5SP90-201ENST00000364801 99 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 RNU1-43P-201ENST00000365052 165 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 PTP4A1P1-201ENST00000420539 515 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 AL139148.1-201ENST00000427122 680 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 TPT1P1-201ENST00000458495 518 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 RN7SL727P-201ENST00000482164 296 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 COX6B1P2-201ENST00000489624 230 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 RFPL4AP5-201ENST00000514977 504 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 AC134349.2-201ENST00000535136 910 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 RN7SL290P-201ENST00000578661 300 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 AP000919.1-201ENST00000582850 985 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 AC011626.1-201ENST00000604710 562 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 AC243960.7-201ENST00000623532 707 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 AP002505.2-201ENST00000623585 696 ntBASIC5.19□□□□□ -1.58
VPS35Q96QK1 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS35Q96QK1 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS35Q96QK1 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 PANDAR-201ENST00000629595 1506 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 BTBD10P1-201ENST00000549824 1352 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms