Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 AC107214.2-201ENST00000608204 634 ntBASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 AL157817.1-201ENST00000614264 790 ntBASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 ZADH2-202ENST00000537114 3205 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 AL031594.1-201ENST00000417123 1932 ntTSL 2 BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
NPAS3Q8IXF0 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC114546.3-201ENST00000623582 1734 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC011447.7-201ENST00000624228 1590 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 LINC01105-203ENST00000431188 3329 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 ELL2P4-201ENST00000446870 1376 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 TROVE2-205ENST00000367446 3081 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 ACOD1-201ENST00000377462 2165 ntAPPRIS P2 TSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 Y_RNA.1-201ENST00000352915 104 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RNU5F-6P-201ENST00000362979 116 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RNU6-308P-201ENST00000390957 107 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 HMGB1P10-201ENST00000395823 563 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL359704.1-201ENST00000411586 781 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RPLP1P10-201ENST00000413972 339 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RPL34P19-201ENST00000415903 342 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 GEMIN2P2-201ENST00000418195 715 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 SDCBPP2-201ENST00000424643 885 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RPL7P44-201ENST00000424827 742 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL512649.2-201ENST00000446206 597 ntTSL 3 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 MTCO3P20-201ENST00000454926 688 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC099670.1-201ENST00000455141 783 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 snoU109.1-201ENST00000459339 135 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RN7SL37P-201ENST00000490461 307 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 RN7SL104P-201ENST00000498686 293 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 VN1R104P-201ENST00000505115 1009 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 HMGB1P29-201ENST00000505659 499 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC093809.1-201ENST00000509155 340 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC114797.1-201ENST00000514003 728 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC138517.1-201ENST00000515724 568 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL512310.1-201ENST00000548639 172 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 NELL2-211ENST00000548826 559 ntTSL 2 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC107958.1-201ENST00000556576 290 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC011447.2-201ENST00000592921 283 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC023513.1-201ENST00000604396 691 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AL627309.6-201ENST00000606857 840 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 AC022893.3-201ENST00000607665 437 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 Z99129.4-201ENST00000624649 2435 ntBASIC7.38□□□□□ -1.23
NPAS3Q8IXF0 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms