Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC011503.2-201ENST00000594230 1500 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 SMG1P7-201ENST00000565246 2704 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
SKA3Q8IX90 STX3-208ENST00000641815 3236 ntBASIC4.65□□□□□ -1.66
SKA3Q8IX90 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.65□□□□□ -1.66
SKA3Q8IX90 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SKA3Q8IX90 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.65□□□□□ -1.66
SKA3Q8IX90 AC000123.3-201ENST00000624029 4975 ntBASIC4.65□□□□□ -1.66
SKA3Q8IX90 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
SKA3Q8IX90 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SKA3Q8IX90 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
SKA3Q8IX90 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SKA3Q8IX90 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 MIR105-1-201ENST00000385222 81 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 RNU1-149P-201ENST00000390870 161 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 RNA5SP241-201ENST00000391326 114 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AL391361.1-201ENST00000405580 489 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 NANOGP4-201ENST00000427230 913 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC124944.2-201ENST00000429866 1242 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 RPL19P16-201ENST00000433839 588 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC011225.1-201ENST00000457751 369 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC022133.1-201ENST00000490961 571 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 PGAM1P13-201ENST00000507497 754 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC022360.1-201ENST00000521058 340 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC092709.1-201ENST00000521355 1045 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 AL162431.4-201ENST00000604674 411 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC109309.2-201ENST00000612597 332 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC107905.1-201ENST00000616204 426 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC022106.2-201ENST00000620114 757 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 AC091932.2-201ENST00000623014 291 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 MTCO1P1-201ENST00000624263 1081 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 CASC19-264ENST00000641912 1184 ntBASIC4.65□□□□□ -1.67
SKA3Q8IX90 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
SKA3Q8IX90 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
SKA3Q8IX90 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC120338.1-201ENST00000625074 1541 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 OR9G4-201ENST00000302957 984 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 Y_RNA.62-201ENST00000362840 99 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 OR1L6-202ENST00000373684 1044 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AL078599.1-201ENST00000402075 293 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 RPL10P10-201ENST00000403509 664 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC090804.1-201ENST00000448870 490 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC079168.1-201ENST00000458741 345 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC022795.1-201ENST00000473808 480 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 CBX1P5-201ENST00000475330 559 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 RPL7P39-201ENST00000481157 744 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 RPS4XP1-201ENST00000482189 787 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC016687.1-201ENST00000482574 353 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 RPS12P31-201ENST00000491419 398 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC147055.1-201ENST00000509261 750 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC022784.5-201ENST00000522241 437 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC040958.1-201ENST00000561102 201 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 METTL15-211ENST00000634762 718 ntTSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 CYP4F35P-202ENST00000636121 390 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms