Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC138761.5-201ENST00000433967 325 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC090804.1-201ENST00000448870 490 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC093840.1-201ENST00000511599 336 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC140134.1-201ENST00000511830 3544 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 RNA5SP453-201ENST00000362503 119 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 RNA5-8SP7-201ENST00000363443 155 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 SNORA2.3-201ENST00000383920 135 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 SNORA70.6-201ENST00000383934 134 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AURKAPS2-201ENST00000454983 333 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 RPL7P32-201ENST00000457119 744 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC128716.1-201ENST00000475129 166 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AL109766.1-201ENST00000555080 552 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AC019322.1-201ENST00000571869 389 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 RNA5SP447-201ENST00000363749 119 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 RNU1-13P-201ENST00000384499 162 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AC000111.2-201ENST00000448200 210 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 TCEA1P1-201ENST00000449716 880 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AC093827.1-201ENST00000480094 861 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AC011005.3-201ENST00000491624 395 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 RPL21P129-201ENST00000491732 478 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 RPSAP51-201ENST00000497462 645 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 IGBP1P4-201ENST00000503202 879 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 MTCYBP13-201ENST00000578634 1093 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 MIR3939-201ENST00000582614 106 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 AC020910.3-201ENST00000603701 874 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 MIR6839-201ENST00000620425 113 ntBASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC88AQ3V6T2 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 AC017079.1-201ENST00000333650 415 ntBASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 TRGV7-201ENST00000427089 353 ntBASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 AC133555.2-201ENST00000550213 292 ntBASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 AC005962.2-201ENST00000611427 652 ntBASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC88AQ3V6T2 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.15□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms