Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC092691.2-201ENST00000461787 803 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 CBX1P5-201ENST00000475330 559 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 OR7E22P-201ENST00000478335 1035 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 EIF1P7-201ENST00000487533 337 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 MYL12BP2-201ENST00000503948 512 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA1P49639 AC105384.2-201ENST00000508433 640 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 ZNF519P4-201ENST00000514008 125 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA1P49639 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA1P49639 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA1P49639 FAM106CP-201ENST00000582212 507 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 CBX3P2-202ENST00000583365 535 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA1P49639 CLIC4P2-201ENST00000601934 717 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AC133552.5-201ENST00000604266 540 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA1P49639 HIRAP1-201ENST00000605318 787 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AC010632.3-201ENST00000611377 369 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AC008759.3-201ENST00000613300 508 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AL139099.4-201ENST00000614802 114 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AL121890.2-201ENST00000617644 465 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AC005899.6-201ENST00000620729 297 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA1P49639 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXA1P49639 AL078595.3-201ENST00000623815 1166 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AL357562.1-201ENST00000624911 609 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA1P49639 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA1P49639 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA1P49639 AC010325.3-201ENST00000641084 394 ntBASIC4.68□□□□□ -1.66
HOXA1P49639 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA1P49639 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA1P49639 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA1P49639 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
HOXA1P49639 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.68□□□□□ -1.66
HOXA1P49639 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXA1P49639 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXA1P49639 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA1P49639 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA1P49639 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA1P49639 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 MFSD8-219ENST00000641228 2559 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HOXA1P49639 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 AC092111.2-201ENST00000611627 1414 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 AL672167.1-204ENST00000641875 3017 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 AMELX-201ENST00000348912 737 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 RN7SKP78-201ENST00000364711 318 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 AL133260.1-201ENST00000405720 405 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC4.67□□□□□ -1.66
HOXA1P49639 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA1P49639 Z68694.1-201ENST00000413929 841 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXA1P49639 AC106883.1-201ENST00000418805 562 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA1P49639 RNGTTP1-201ENST00000420965 728 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA1P49639 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA1P49639 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
HOXA1P49639 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 AC073587.1-201ENST00000447093 876 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC004129.2-201ENST00000457229 287 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC245028.2-201ENST00000458673 253 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 snoU109.3-201ENST00000459477 145 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 RPS7P10-201ENST00000464254 603 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC023245.1-201ENST00000468501 517 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 SETP6-201ENST00000479329 568 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC116562.1-201ENST00000485355 781 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 PSMA2P2-201ENST00000504319 686 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA1P49639 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA1P49639 AC098976.1-201ENST00000513014 541 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC133963.2-201ENST00000513686 578 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA1P49639 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 MAST4-IT1-201ENST00000514241 658 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC138938.1-201ENST00000515431 782 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC138517.1-201ENST00000515724 568 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 MTND2P32-201ENST00000521584 1038 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXA1P49639 OR7E13P-201ENST00000526052 910 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA1P49639 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA1P49639 AC125612.1-201ENST00000547580 377 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA1P49639 MRPS21P8-201ENST00000569196 235 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC007346.1-201ENST00000569208 867 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms