Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MIR3939-201ENST00000582614 106 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 AL139041.1-201ENST00000605480 610 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL18A1P39060 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL18A1P39060 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL18A1P39060 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC6.39□□□□□ -1.39
COL18A1P39060 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL18A1P39060 AC007618.1-201ENST00000366455 732 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 CYP4F29P-201ENST00000420685 446 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 GAPDHP49-201ENST00000421421 961 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.39□□□□□ -1.39
COL18A1P39060 MTND2P40-201ENST00000436718 841 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 RPL36AP41-201ENST00000493820 306 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC6.39□□□□□ -1.39
COL18A1P39060 RNA5SP464-201ENST00000516251 108 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 RNU1-6P-201ENST00000516290 144 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.39□□□□□ -1.39
COL18A1P39060 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.39□□□□□ -1.39
COL18A1P39060 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 AC012409.3-201ENST00000611343 981 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 AC114781.5-201ENST00000615297 108 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 SMG1P7-201ENST00000565246 2704 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
COL18A1P39060 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 QRSL1P2-201ENST00000418582 964 ntBASIC6.38□□□□□ -1.39
COL18A1P39060 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 AC108751.3-201ENST00000461814 1020 ntBASIC6.38□□□□□ -1.39
COL18A1P39060 RPSAP51-201ENST00000497462 645 ntBASIC6.38□□□□□ -1.39
COL18A1P39060 AC093840.1-201ENST00000511599 336 ntBASIC6.38□□□□□ -1.39
COL18A1P39060 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.38□□□□□ -1.39
COL18A1P39060 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.38□□□□□ -1.39
COL18A1P39060 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.38□□□□□ -1.39
COL18A1P39060 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL18A1P39060 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC6.38□□□□□ -1.39
COL18A1P39060 MAPK10-371ENST00000641952 5209 ntBASIC6.38□□□□□ -1.39
COL18A1P39060 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL18A1P39060 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.38□□□□□ -1.39
COL18A1P39060 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
COL18A1P39060 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
COL18A1P39060 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC6.37□□□□□ -1.39
COL18A1P39060 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
COL18A1P39060 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 AC007998.4-201ENST00000612496 2533 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 RAD17P1-201ENST00000418130 2042 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 RNU1-13P-201ENST00000384499 162 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 MIR134-201ENST00000385258 73 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 RNU6ATAC5P-201ENST00000388104 126 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC6.37□□□□□ -1.39
COL18A1P39060 AC140479.3-201ENST00000418944 1126 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 RAD23BP1-201ENST00000421404 1227 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.37□□□□□ -1.39
COL18A1P39060 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC6.37□□□□□ -1.39
COL18A1P39060 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC6.37□□□□□ -1.39
COL18A1P39060 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC6.37□□□□□ -1.39
COL18A1P39060 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.37□□□□□ -1.39
COL18A1P39060 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.37□□□□□ -1.39
COL18A1P39060 AC093765.1-201ENST00000603758 881 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 AL049794.2-201ENST00000616301 365 ntBASIC6.37□□□□□ -1.39
COL18A1P39060 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.37□□□□□ -1.39
COL18A1P39060 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC6.37□□□□□ -1.39
COL18A1P39060 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
COL18A1P39060 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC6.37□□□□□ -1.39
COL18A1P39060 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms