Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 RPS4XP16-201ENST00000427198 791 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AC009362.1-201ENST00000427253 406 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AC124944.2-201ENST00000429866 1242 ntBASIC5.79□□□□□ -1.48
MSX2P35548 MOB1AP1-201ENST00000430903 535 ntBASIC5.79□□□□□ -1.48
MSX2P35548 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 RPS10P14-201ENST00000440748 502 ntBASIC5.79□□□□□ -1.48
MSX2P35548 RPS7P4-201ENST00000444127 582 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 SRRM1P2-201ENST00000464531 1192 ntBASIC5.79□□□□□ -1.48
MSX2P35548 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 RPL7L1P7-201ENST00000509986 724 ntBASIC5.79□□□□□ -1.48
MSX2P35548 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 ELOCP32-201ENST00000548625 324 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AC011611.5-201ENST00000552477 578 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 AC008759.1-201ENST00000589783 983 ntBASIC5.79□□□□□ -1.48
MSX2P35548 RSL24D1P11-201ENST00000591045 491 ntBASIC5.79□□□□□ -1.48
MSX2P35548 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.79□□□□□ -1.48
MSX2P35548 AC125494.2-201ENST00000602431 657 ntBASIC5.79□□□□□ -1.48
MSX2P35548 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AC093765.1-201ENST00000603758 881 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AC024085.1-201ENST00000604299 432 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AC092653.1-201ENST00000608509 531 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AC073968.1-201ENST00000618594 637 ntBASIC5.79□□□□□ -1.48
MSX2P35548 MIR7854-201ENST00000620068 65 ntBASIC5.79□□□□□ -1.48
MSX2P35548 JAKMIP2-AS1-202ENST00000627433 831 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.79□□□□□ -1.48
MSX2P35548 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 SGO1P2-201ENST00000429458 1589 ntBASIC5.79□□□□□ -1.48
MSX2P35548 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
MSX2P35548 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 PARP4P2-201ENST00000446672 3326 ntBASIC5.79□□□□□ -1.48
MSX2P35548 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
MSX2P35548 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX2P35548 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
MSX2P35548 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
MSX2P35548 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX2P35548 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX2P35548 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
MSX2P35548 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX2P35548 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
MSX2P35548 SNORD65-201ENST00000391079 73 ntBASIC5.78□□□□□ -1.48
MSX2P35548 SLC9B1P2-201ENST00000398120 1184 ntBASIC5.78□□□□□ -1.48
MSX2P35548 OOSP1-201ENST00000398992 1270 ntBASIC5.78□□□□□ -1.48
MSX2P35548 MOB4-205ENST00000409916 829 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 ELOCP17-201ENST00000414751 326 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 OR6C64P-201ENST00000419708 825 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AC246680.2-201ENST00000422106 389 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 AC244035.1-201ENST00000430042 390 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AC005189.1-201ENST00000431286 310 ntBASIC5.78□□□□□ -1.48
MSX2P35548 MTND1P4-201ENST00000435196 415 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX2P35548 MTATP6P23-201ENST00000440153 476 ntBASIC5.78□□□□□ -1.48
MSX2P35548 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 MTCYBP42-201ENST00000444653 1130 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 MRPL42P4-201ENST00000453267 443 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms