Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC4P09017 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC4P09017 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXC4P09017 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.02□□□□□ -1.61
HOXC4P09017 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.02□□□□□ -1.61
HOXC4P09017 AC004948.1-201ENST00000609858 672 ntBASIC5.02□□□□□ -1.61
HOXC4P09017 AL445528.2-201ENST00000620582 470 ntBASIC5.02□□□□□ -1.61
HOXC4P09017 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC4P09017 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC4P09017 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC4P09017 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXC4P09017 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC4P09017 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC4P09017 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.02□□□□□ -1.61
HOXC4P09017 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
HOXC4P09017 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXC4P09017 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC4P09017 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC4P09017 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC4P09017 PROS2P-201ENST00000474651 1951 ntBASIC5.02□□□□□ -1.61
HOXC4P09017 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
HOXC4P09017 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC4P09017 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC4P09017 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC4P09017 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC4P09017 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
HOXC4P09017 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 RN7SKP95-201ENST00000362860 303 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 SNORA2.3-201ENST00000383920 135 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 AL050305.1-201ENST00000399993 1230 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 AL390316.1-201ENST00000406279 553 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC4P09017 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC4P09017 COX6CP13-201ENST00000428703 226 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC4P09017 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC4P09017 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC4P09017 AC108161.1-201ENST00000461060 402 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 AC135999.1-201ENST00000478962 479 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 RPL7P16-201ENST00000479738 738 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 RPS23P1-201ENST00000491662 432 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC4P09017 AC140172.1-201ENST00000502928 141 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC4P09017 BRD9P1-201ENST00000529855 560 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 AC027369.5-201ENST00000533838 755 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC4P09017 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC4P09017 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.01□□□□□ -1.61
HOXC4P09017 AL390334.1-201ENST00000556395 450 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC4P09017 AC116651.1-201ENST00000609724 556 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 AL356752.1-201ENST00000615844 593 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 AC020763.5-201ENST00000623298 430 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC4P09017 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC4P09017 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
HOXC4P09017 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC4P09017 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.01□□□□□ -1.61
HOXC4P09017 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC4P09017 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
HOXC4P09017 OFD1P9Y-201ENST00000417699 1491 ntBASIC5□□□□□ -1.61
HOXC4P09017 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5□□□□□ -1.61
HOXC4P09017 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
HOXC4P09017 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5□□□□□ -1.61
HOXC4P09017 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5□□□□□ -1.61
HOXC4P09017 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5□□□□□ -1.61
HOXC4P09017 RN7SKP74-201ENST00000362849 309 ntBASIC5□□□□□ -1.61
HOXC4P09017 RNU6-673P-201ENST00000365084 104 ntBASIC5□□□□□ -1.61
HOXC4P09017 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
HOXC4P09017 ATP5HP3-201ENST00000396994 486 ntBASIC5□□□□□ -1.61
HOXC4P09017 AL358178.1-201ENST00000407698 397 ntBASIC5□□□□□ -1.61
HOXC4P09017 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5□□□□□ -1.61
HOXC4P09017 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5□□□□□ -1.61
HOXC4P09017 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5□□□□□ -1.61
HOXC4P09017 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5□□□□□ -1.61
HOXC4P09017 RHOT1P3-201ENST00000436571 331 ntBASIC5□□□□□ -1.61
HOXC4P09017 PA2G4P6-201ENST00000438325 1197 ntBASIC5□□□□□ -1.61
HOXC4P09017 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5□□□□□ -1.61
HOXC4P09017 AL772161.1-201ENST00000439130 476 ntBASIC5□□□□□ -1.61
HOXC4P09017 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5□□□□□ -1.61
HOXC4P09017 SUMO2P1-206ENST00000445436 284 ntBASIC5□□□□□ -1.61
HOXC4P09017 AC004980.3-201ENST00000447046 365 ntBASIC5□□□□□ -1.61
HOXC4P09017 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HOXC4P09017 RPS4XP12-201ENST00000461747 709 ntBASIC5□□□□□ -1.61
HOXC4P09017 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5□□□□□ -1.61
HOXC4P09017 RNA5SP230-201ENST00000517039 122 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms