Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC006378.2-201ENST00000623178 2476 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 OR11H5P-202ENST00000641612 1325 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC073544.1-201ENST00000600110 1595 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 SERPINB13-202ENST00000344731 3114 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 RN7SKP107-201ENST00000364157 290 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC006511.2-201ENST00000388966 660 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 GSTM3P2-201ENST00000412746 530 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 USP9YP6-201ENST00000413550 854 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL139158.1-201ENST00000424719 340 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC109583.1-201ENST00000432156 268 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 NIP7P1-201ENST00000433227 512 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MTND4P25-201ENST00000441039 533 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 NFU1P2-201ENST00000448700 469 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 USP9YP34-201ENST00000453983 808 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC099563.1-201ENST00000456086 418 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 NDUFA5P5-201ENST00000468361 342 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 RN7SL797P-201ENST00000486314 297 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC093824.1-201ENST00000508796 343 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC097460.2-201ENST00000511857 741 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 IGHVIII-26-1-201ENST00000520387 250 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL121579.1-201ENST00000555129 305 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 CFL2-206ENST00000556161 546 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 EEF1B2P1-201ENST00000567221 672 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MIR4685-201ENST00000578185 69 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MIR3135A-201ENST00000578460 77 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC113361.1-201ENST00000606683 543 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC104184.1-201ENST00000607513 721 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC092954.2-201ENST00000609103 430 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL352984.2-202ENST00000613699 155 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MIR8089-201ENST00000620165 82 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 FAM157B-203ENST00000639350 358 ntBASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms