Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC112198.2-201ENST00000426589 6996 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SKA3Q8IX90 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 AC017079.1-201ENST00000333650 415 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 RNU1-19P-201ENST00000363306 165 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 RPL35AP24-201ENST00000413846 330 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 NPM1P4-201ENST00000414095 812 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 FAM96AP1-201ENST00000430879 482 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 AP000797.2-201ENST00000475768 606 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 RPL7P40-201ENST00000481703 745 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 HMGB3P14-201ENST00000494195 599 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 ATP5LP3-201ENST00000514223 304 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 RNU6-941P-201ENST00000516346 108 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 IGKV2-18-201ENST00000522607 343 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 RPL10P14-201ENST00000565265 298 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 RN7SL435P-201ENST00000584418 282 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 AC005252.1-201ENST00000604518 1063 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 AL356608.1-201ENST00000610034 820 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 MIR6768-201ENST00000610734 72 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 MIR6862-1-201ENST00000613016 70 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 MIR6862-2-201ENST00000614755 70 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 CDC27P2-201ENST00000425026 1922 ntBASIC4.67□□□□□ -1.66
SKA3Q8IX90 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SKA3Q8IX90 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC4.67□□□□□ -1.66
SKA3Q8IX90 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AMELX-201ENST00000348912 737 ntTSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 RN7SKP269-201ENST00000365545 319 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 RPL7AP49-201ENST00000429522 581 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AL591438.1-201ENST00000433508 581 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 RPS11P7-201ENST00000442125 465 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC016772.1-201ENST00000444170 1261 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AL157385.1-201ENST00000446973 268 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC104634.1-201ENST00000452720 462 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC020779.1-201ENST00000478757 796 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC093827.1-201ENST00000480094 861 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 MYL12BP2-201ENST00000503948 512 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 BTG4P1-201ENST00000510421 183 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 RNA5SP373-201ENST00000517271 95 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 AC138473.1-201ENST00000605717 526 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AP000864.1-201ENST00000609424 650 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 MIR6837-201ENST00000620884 64 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 TTC39DP-201ENST00000416781 1688 ntBASIC4.66□□□□□ -1.66
SKA3Q8IX90 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SKA3Q8IX90 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.66□□□□□ -1.66
SKA3Q8IX90 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 792.9 ms