Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC004908.1-201ENST00000606572 541 ntBASIC6.86□□□□□ -1.31
LIG3P49916 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.86□□□□□ -1.31
LIG3P49916 AL391497.1-201ENST00000608671 547 ntBASIC6.86□□□□□ -1.31
LIG3P49916 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
LIG3P49916 AC010678.1-201ENST00000614118 713 ntBASIC6.86□□□□□ -1.31
LIG3P49916 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
LIG3P49916 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
LIG3P49916 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
LIG3P49916 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC6.86□□□□□ -1.31
LIG3P49916 AC018628.1-201ENST00000624147 3819 ntBASIC6.86□□□□□ -1.31
LIG3P49916 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
LIG3P49916 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.86□□□□□ -1.31
LIG3P49916 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
LIG3P49916 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
LIG3P49916 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.86□□□□□ -1.31
LIG3P49916 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
LIG3P49916 AC011369.2-201ENST00000624423 1567 ntBASIC6.86□□□□□ -1.31
LIG3P49916 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.86□□□□□ -1.31
LIG3P49916 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
LIG3P49916 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.86□□□□□ -1.31
LIG3P49916 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.86□□□□□ -1.31
LIG3P49916 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
LIG3P49916 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
LIG3P49916 AC083837.1-201ENST00000565297 2994 ntBASIC6.85□□□□□ -1.31
LIG3P49916 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.85□□□□□ -1.31
LIG3P49916 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 HMGB1P5-201ENST00000255320 642 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 RNU4-21P-201ENST00000362802 126 ntBASIC6.85□□□□□ -1.31
LIG3P49916 RNA5SP382-201ENST00000363355 112 ntBASIC6.85□□□□□ -1.31
LIG3P49916 RNU6-532P-201ENST00000384318 107 ntBASIC6.85□□□□□ -1.31
LIG3P49916 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
LIG3P49916 RNU6-1320P-201ENST00000390838 107 ntBASIC6.85□□□□□ -1.31
LIG3P49916 RNU6-1269P-201ENST00000391139 107 ntBASIC6.85□□□□□ -1.31
LIG3P49916 U3.28-201ENST00000391249 210 ntBASIC6.85□□□□□ -1.31
LIG3P49916 DEFB108C-201ENST00000400154 252 ntBASIC6.85□□□□□ -1.31
LIG3P49916 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 RNU6-77P-201ENST00000410554 91 ntBASIC6.85□□□□□ -1.31
LIG3P49916 USP9YP33-201ENST00000412220 421 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AC007899.1-201ENST00000412776 775 ntBASIC6.85□□□□□ -1.31
LIG3P49916 CDK8P2-201ENST00000415020 547 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 AC019050.1-201ENST00000418508 492 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AC006509.1-201ENST00000420788 634 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AHCYP8-201ENST00000425108 209 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AP003385.1-201ENST00000426387 893 ntBASIC6.85□□□□□ -1.31
LIG3P49916 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 E2F6P3-201ENST00000441743 743 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC6.85□□□□□ -1.31
LIG3P49916 KATNBL1P6-201ENST00000453433 915 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AC239798.3-201ENST00000454459 408 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 RNU6-599P-201ENST00000459383 107 ntBASIC6.85□□□□□ -1.31
LIG3P49916 RNU6-1193P-201ENST00000459461 107 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AC021006.1-201ENST00000489849 553 ntBASIC6.85□□□□□ -1.31
LIG3P49916 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 AC009567.2-201ENST00000502989 349 ntBASIC6.85□□□□□ -1.31
LIG3P49916 SNORA58-201ENST00000505219 137 ntBASIC6.85□□□□□ -1.31
LIG3P49916 MRPS5P3-201ENST00000515577 166 ntBASIC6.85□□□□□ -1.31
LIG3P49916 NRON-201ENST00000517270 370 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AC087808.1-201ENST00000520501 361 ntBASIC6.85□□□□□ -1.31
LIG3P49916 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC6.85□□□□□ -1.31
LIG3P49916 CHEK2P2-201ENST00000554701 672 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 NMNAT1P5-201ENST00000559657 841 ntBASIC6.85□□□□□ -1.31
LIG3P49916 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 HNRNPA1P74-201ENST00000560782 835 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 AC125494.2-201ENST00000602431 657 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AP001267.4-201ENST00000602598 545 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AP001596.2-201ENST00000608410 312 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AC108747.1-201ENST00000609508 535 ntBASIC6.85□□□□□ -1.31
LIG3P49916 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 AC026951.2-201ENST00000613847 241 ntBASIC6.85□□□□□ -1.31
LIG3P49916 U6.42-201ENST00000618440 107 ntBASIC6.85□□□□□ -1.31
LIG3P49916 RNU6-368P-201ENST00000620928 107 ntBASIC6.85□□□□□ -1.31
LIG3P49916 RNU6-538P-201ENST00000622329 107 ntBASIC6.85□□□□□ -1.31
LIG3P49916 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC6.85□□□□□ -1.31
LIG3P49916 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.85□□□□□ -1.31
LIG3P49916 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms