Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.4□□□□□ -1.39
SMARCA1P28370 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.39
SMARCA1P28370 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.4□□□□□ -1.39
SMARCA1P28370 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SMARCA1P28370 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SMARCA1P28370 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SMARCA1P28370 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SMARCA1P28370 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC011933.2-201ENST00000578539 2790 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 RNA5SP234-201ENST00000363916 119 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
SMARCA1P28370 U3.25-201ENST00000391209 220 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
SMARCA1P28370 RPS3AP25-201ENST00000411660 793 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC234781.4-201ENST00000419384 244 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.39□□□□□ -1.39
SMARCA1P28370 MTND2P2-201ENST00000434633 945 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.39□□□□□ -1.39
SMARCA1P28370 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 OR11I1P-201ENST00000486033 954 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC021106.1-201ENST00000509020 1058 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC6.39□□□□□ -1.39
SMARCA1P28370 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AF230666.2-201ENST00000602328 725 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.39□□□□□ -1.39
SMARCA1P28370 AC097655.1-201ENST00000635075 318 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 AL049767.1-202ENST00000637826 242 ntBASIC6.39□□□□□ -1.39
SMARCA1P28370 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.39□□□□□ -1.39
SMARCA1P28370 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SMARCA1P28370 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMARCA1P28370 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SMARCA1P28370 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 RNA5SP319-201ENST00000362768 119 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 RN7SKP160-201ENST00000363804 340 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.38□□□□□ -1.39
SMARCA1P28370 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 RNA5SP105-201ENST00000391123 113 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 HYALP1-201ENST00000417674 1279 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 OR51A6P-201ENST00000418680 1004 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC6.38□□□□□ -1.39
SMARCA1P28370 RPL7P56-201ENST00000429441 717 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 RPL12P17-201ENST00000432393 498 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6.38□□□□□ -1.39
SMARCA1P28370 RRM2P4-201ENST00000441721 562 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 SPRYD7P1-201ENST00000443861 570 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 IGBP1P3-201ENST00000447449 1000 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 RANP1-206ENST00000455094 651 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.38□□□□□ -1.39
SMARCA1P28370 RPL35AP19-201ENST00000469425 329 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 AC100832.1-201ENST00000471945 383 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 RN7SL423P-201ENST00000486202 304 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.38□□□□□ -1.39
SMARCA1P28370 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.38□□□□□ -1.39
SMARCA1P28370 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 AC136777.2-201ENST00000522979 358 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms