Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HLA-DMBP28068 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC3.96□□□□□ -1.78
HLA-DMBP28068 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HLA-DMBP28068 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HLA-DMBP28068 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DMBP28068 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC011503.2-201ENST00000594230 1500 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DMBP28068 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 MED23-203ENST00000368058 4576 ntTSL 5 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC017079.1-201ENST00000333650 415 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 RNA5SP335-201ENST00000363817 110 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DMBP28068 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DMBP28068 MIR1286-201ENST00000408112 78 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 RNU6ATAC18P-201ENST00000408413 101 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC211486.3-201ENST00000412694 621 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 DSTNP5-201ENST00000427921 523 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 CYCSP6-201ENST00000434498 302 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC046176.1-201ENST00000435260 1170 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC092447.2-201ENST00000435487 669 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 CYCSP12-201ENST00000437729 300 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 RPL7P45-201ENST00000455851 743 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 FGB-207ENST00000509493 1164 ntTSL 5 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 RNA5SP34-201ENST00000516887 130 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 RNA5SP373-201ENST00000517271 95 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DMBP28068 IMMP1LP3-201ENST00000604197 224 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 BNIP3P35-201ENST00000604530 490 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC009597.2-201ENST00000604659 592 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 AL359513.1-201ENST00000614364 557 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC3.95□□□□□ -1.78
HLA-DMBP28068 CDC27P2-201ENST00000425026 1922 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DMBP28068 AC083843.3-201ENST00000623679 2186 ntBASIC3.95□□□□□ -1.78
HLA-DMBP28068 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 AL035079.1-201ENST00000405210 287 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 RN7SKP278-201ENST00000410504 342 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 RPL35AP24-201ENST00000413846 330 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 PCNPP4-201ENST00000414817 517 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AL133325.1-201ENST00000421090 382 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 RPL7L1P9-201ENST00000431298 745 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 RPL34P6-201ENST00000432390 345 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 GAPDHP58-201ENST00000438477 1006 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC020779.1-201ENST00000478757 796 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 RN7SL30P-201ENST00000488416 306 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 RPEP1-201ENST00000504507 658 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC008638.1-201ENST00000506035 866 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 HMGB1P40-201ENST00000525121 540 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC051619.2-201ENST00000559063 397 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC016180.1-201ENST00000567945 403 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 CYP4F35P-202ENST00000636121 390 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 AC100778.3-201ENST00000580060 1750 ntBASIC3.94□□□□□ -1.78
HLA-DMBP28068 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DMBP28068 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DMBP28068 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms