Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL356390.1-201ENST00000455684 397 ntBASIC4.87□□□□□ -1.63
COL5A1P20908 RPL5P12-201ENST00000477071 851 ntBASIC4.87□□□□□ -1.63
COL5A1P20908 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.87□□□□□ -1.63
COL5A1P20908 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
COL5A1P20908 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL5A1P20908 RN7SL290P-201ENST00000578661 300 ntBASIC4.87□□□□□ -1.63
COL5A1P20908 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 AL359757.1-201ENST00000623176 255 ntBASIC4.87□□□□□ -1.63
COL5A1P20908 SAMMSON-226ENST00000642089 1582 ntBASIC4.87□□□□□ -1.63
COL5A1P20908 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 AC092376.2-201ENST00000622621 4116 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 OR4K15-201ENST00000305051 1216 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A1P20908 SNORA11C-201ENST00000408532 129 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 RSU1P3-201ENST00000412878 835 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AL354766.1-201ENST00000423396 542 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AC122718.1-201ENST00000439448 744 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 PRPF38AP1-201ENST00000451976 933 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 FAM133DP-201ENST00000464802 691 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AC034236.1-201ENST00000469891 373 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A1P20908 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A1P20908 AC105129.1-201ENST00000560250 297 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A1P20908 PRPF19P1-201ENST00000584766 898 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL5A1P20908 AC020910.3-201ENST00000603701 874 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 BNIP3P35-201ENST00000604530 490 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AL590392.1-201ENST00000604960 446 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AL034374.2-201ENST00000605281 548 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AC006338.2-201ENST00000616864 791 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL5A1P20908 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A1P20908 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
COL5A1P20908 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 SELE-204ENST00000367776 3576 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 RNA5SP515-201ENST00000364570 118 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 SNORA2.3-201ENST00000383920 135 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 MIR23B-201ENST00000384832 97 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AL021331.1-201ENST00000402817 582 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 RPL21P67-201ENST00000402896 478 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 ELOCP19-201ENST00000411919 318 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 NRBF2P3-201ENST00000432731 865 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 TCEA1P1-201ENST00000449716 880 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 SCARNA22-201ENST00000503991 125 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A1P20908 MORF4L1P3-201ENST00000525966 950 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A1P20908 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A1P20908 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A1P20908 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 AC019206.1-201ENST00000621938 425 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 AP001153.1-201ENST00000641024 338 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A1P20908 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A1P20908 ASNSP1-204ENST00000641977 1664 ntBASIC4.86□□□□□ -1.63
COL5A1P20908 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A1P20908 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A1P20908 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.85□□□□□ -1.63
COL5A1P20908 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.85□□□□□ -1.63
COL5A1P20908 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A1P20908 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC4.85□□□□□ -1.63
COL5A1P20908 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC4.85□□□□□ -1.63
COL5A1P20908 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A1P20908 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A1P20908 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
COL5A1P20908 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
COL5A1P20908 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC4.85□□□□□ -1.63
COL5A1P20908 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms