Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.86□□□□□ -1.63
SDC1P18827 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
SDC1P18827 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.85□□□□□ -1.63
SDC1P18827 AC026523.2-201ENST00000625039 7739 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AC020633.1-201ENST00000468439 2247 ntBASIC4.85□□□□□ -1.63
SDC1P18827 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SDC1P18827 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SDC1P18827 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SDC1P18827 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.85□□□□□ -1.63
SDC1P18827 MIR600-201ENST00000385007 98 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AC013442.1-201ENST00000397347 228 ntBASIC4.85□□□□□ -1.63
SDC1P18827 RPL10P10-201ENST00000403509 664 ntBASIC4.85□□□□□ -1.63
SDC1P18827 RN7SKP59-201ENST00000410520 314 ntBASIC4.85□□□□□ -1.63
SDC1P18827 RPL35AP24-201ENST00000413846 330 ntBASIC4.85□□□□□ -1.63
SDC1P18827 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC4.85□□□□□ -1.63
SDC1P18827 OR5M12P-201ENST00000423388 929 ntBASIC4.85□□□□□ -1.63
SDC1P18827 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.85□□□□□ -1.63
SDC1P18827 AC079807.1-201ENST00000429993 481 ntBASIC4.85□□□□□ -1.63
SDC1P18827 BX323845.1-201ENST00000432417 179 ntBASIC4.85□□□□□ -1.63
SDC1P18827 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.85□□□□□ -1.63
SDC1P18827 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.85□□□□□ -1.63
SDC1P18827 GTF3AP5-201ENST00000442645 697 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.85□□□□□ -1.63
SDC1P18827 AC004980.3-201ENST00000447046 365 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.85□□□□□ -1.63
SDC1P18827 AC073073.1-201ENST00000493920 463 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.85□□□□□ -1.63
SDC1P18827 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.85□□□□□ -1.63
SDC1P18827 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.85□□□□□ -1.63
SDC1P18827 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.85□□□□□ -1.63
SDC1P18827 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.85□□□□□ -1.63
SDC1P18827 AC024940.3-201ENST00000538551 316 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.85□□□□□ -1.63
SDC1P18827 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SDC1P18827 AC117490.2-201ENST00000610042 594 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.85□□□□□ -1.63
SDC1P18827 AC037198.3-201ENST00000616754 526 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AC015914.2-201ENST00000618167 288 ntBASIC4.85□□□□□ -1.63
SDC1P18827 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.85□□□□□ -1.63
SDC1P18827 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SDC1P18827 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SDC1P18827 MUC2-202ENST00000613187 4845 ntBASIC4.85□□□□□ -1.63
SDC1P18827 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
SDC1P18827 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SDC1P18827 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.85□□□□□ -1.63
SDC1P18827 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SDC1P18827 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.84□□□□□ -1.63
SDC1P18827 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SDC1P18827 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.84□□□□□ -1.63
SDC1P18827 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SDC1P18827 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SDC1P18827 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
SDC1P18827 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.84□□□□□ -1.63
SDC1P18827 MTCO1P8-201ENST00000416914 1523 ntBASIC4.84□□□□□ -1.63
SDC1P18827 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.84□□□□□ -1.63
SDC1P18827 RN7SKP113-201ENST00000363891 295 ntBASIC4.84□□□□□ -1.63
SDC1P18827 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SDC1P18827 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.84□□□□□ -1.63
SDC1P18827 NANOGP4-201ENST00000427230 913 ntBASIC4.84□□□□□ -1.63
SDC1P18827 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.84□□□□□ -1.63
SDC1P18827 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.84□□□□□ -1.63
SDC1P18827 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.84□□□□□ -1.63
SDC1P18827 AL356981.1-201ENST00000454879 684 ntBASIC4.84□□□□□ -1.63
SDC1P18827 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SDC1P18827 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.84□□□□□ -1.63
SDC1P18827 RN7SL443P-201ENST00000464331 290 ntBASIC4.84□□□□□ -1.63
SDC1P18827 AC108693.1-201ENST00000496068 432 ntBASIC4.84□□□□□ -1.63
SDC1P18827 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.84□□□□□ -1.63
SDC1P18827 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.84□□□□□ -1.63
SDC1P18827 AC027026.1-201ENST00000532323 742 ntBASIC4.84□□□□□ -1.63
SDC1P18827 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.84□□□□□ -1.63
SDC1P18827 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.84□□□□□ -1.63
SDC1P18827 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SDC1P18827 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC4.84□□□□□ -1.63
SDC1P18827 AC116553.2-201ENST00000564203 463 ntBASIC4.84□□□□□ -1.63
SDC1P18827 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.84□□□□□ -1.63
SDC1P18827 RNU6-84P-201ENST00000607737 102 ntBASIC4.84□□□□□ -1.63
SDC1P18827 OR7M1P-201ENST00000608946 533 ntBASIC4.84□□□□□ -1.63
SDC1P18827 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.84□□□□□ -1.63
SDC1P18827 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.84□□□□□ -1.63
SDC1P18827 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SDC1P18827 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.84□□□□□ -1.63
SDC1P18827 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SDC1P18827 AL672167.1-204ENST00000641875 3017 ntBASIC4.84□□□□□ -1.63
SDC1P18827 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
SDC1P18827 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
SDC1P18827 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.84□□□□□ -1.64
SDC1P18827 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
SDC1P18827 AL031595.2-201ENST00000624215 19071 ntBASIC4.84□□□□□ -1.64
SDC1P18827 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SDC1P18827 KARSP1-201ENST00000451871 1752 ntBASIC4.83□□□□□ -1.64
SDC1P18827 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 AC093909.5-201ENST00000621839 1799 ntBASIC4.83□□□□□ -1.64
SDC1P18827 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SDC1P18827 AC011493.1-201ENST00000596753 1632 ntBASIC4.83□□□□□ -1.64
SDC1P18827 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SDC1P18827 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 MTCO1P7-201ENST00000419523 1542 ntBASIC4.83□□□□□ -1.64
SDC1P18827 PANDAR-201ENST00000629595 1506 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms