Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HMGB1P09429 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.96□□□□□ -1.3
HMGB1P09429 AL049737.1-201ENST00000413920 1403 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.96□□□□□ -1.3
HMGB1P09429 RPL11P3-201ENST00000395256 523 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC6.96□□□□□ -1.3
HMGB1P09429 AC073310.1-201ENST00000423226 1033 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
HMGB1P09429 AL590399.2-201ENST00000427536 309 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AC105402.2-201ENST00000438503 358 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 ATP5LP2-201ENST00000440646 311 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HMGB1P09429 AC068228.1-201ENST00000461723 211 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 SETP6-201ENST00000479329 568 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AC099521.1-201ENST00000482557 334 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 NIP7P2-201ENST00000485801 544 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 PDCL3P4-201ENST00000489621 720 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.96□□□□□ -1.3
HMGB1P09429 AC093763.2-201ENST00000505334 1223 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.96□□□□□ -1.3
HMGB1P09429 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.96□□□□□ -1.3
HMGB1P09429 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.96□□□□□ -1.3
HMGB1P09429 AC022790.1-201ENST00000522872 204 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AC090819.1-201ENST00000523800 1111 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 SOX5P1-201ENST00000524155 1127 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC6.96□□□□□ -1.3
HMGB1P09429 AP003717.3-201ENST00000544832 1180 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC6.96□□□□□ -1.3
HMGB1P09429 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HMGB1P09429 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.96□□□□□ -1.3
HMGB1P09429 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.96□□□□□ -1.3
HMGB1P09429 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.96□□□□□ -1.3
HMGB1P09429 GARSP1-201ENST00000570895 719 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AP005262.1-201ENST00000582646 997 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 RPL27-207ENST00000590864 569 ntTSL 2 BASIC6.96□□□□□ -1.3
HMGB1P09429 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.96□□□□□ -1.3
HMGB1P09429 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.96□□□□□ -1.3
HMGB1P09429 AC096586.1-201ENST00000610267 561 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 MIR6793-201ENST00000612376 63 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 Six3os1_2.1-201ENST00000616963 217 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AC023509.5-201ENST00000617434 807 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 PDCD6IPP1-202ENST00000622242 1064 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.96□□□□□ -1.3
HMGB1P09429 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.96□□□□□ -1.3
HMGB1P09429 AL596275.2-207ENST00000641188 675 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
HMGB1P09429 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
HMGB1P09429 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
HMGB1P09429 KYNUP3-201ENST00000574386 1341 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 AC104446.1-201ENST00000613728 1321 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HMGB1P09429 Z95327.2-201ENST00000414579 1873 ntBASIC6.96□□□□□ -1.3
HMGB1P09429 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HMGB1P09429 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.95□□□□□ -1.3
HMGB1P09429 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
HMGB1P09429 AC091046.3-201ENST00000631455 1574 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC6.95□□□□□ -1.3
HMGB1P09429 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC6.95□□□□□ -1.3
HMGB1P09429 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC6.95□□□□□ -1.3
HMGB1P09429 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HMGB1P09429 RNGTTP1-201ENST00000420965 728 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 CRIP1P1-201ENST00000427567 185 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 TRIM60P3Y-201ENST00000432201 673 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AC007679.3-201ENST00000434035 414 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.95□□□□□ -1.3
HMGB1P09429 VN1R110P-201ENST00000438988 971 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AC023141.8-201ENST00000442554 208 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.95□□□□□ -1.3
HMGB1P09429 snoU13.29-201ENST00000459370 104 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 RPL32P14-201ENST00000463196 378 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AC092905.1-201ENST00000467527 949 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HMGB1P09429 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC6.95□□□□□ -1.3
HMGB1P09429 MTATP6P22-201ENST00000507369 598 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 GAPDHP71-201ENST00000511530 1003 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6.95□□□□□ -1.3
HMGB1P09429 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.95□□□□□ -1.3
HMGB1P09429 OR5AN2P-201ENST00000534535 896 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AC006512.2-201ENST00000543250 486 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.95□□□□□ -1.3
HMGB1P09429 AC091078.2-201ENST00000557145 559 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC6.95□□□□□ -1.3
HMGB1P09429 MIR4458-201ENST00000578872 75 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC6.95□□□□□ -1.3
HMGB1P09429 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.95□□□□□ -1.3
HMGB1P09429 NANOGP3-201ENST00000605855 286 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.95□□□□□ -1.3
HMGB1P09429 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC6.95□□□□□ -1.3
HMGB1P09429 AC108673.3-201ENST00000609183 335 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 VN1R9P-201ENST00000614184 867 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 AC015804.1-201ENST00000622935 435 ntBASIC6.95□□□□□ -1.3
HMGB1P09429 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HMGB1P09429 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC6.95□□□□□ -1.3
HMGB1P09429 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HMGB1P09429 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HMGB1P09429 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HMGB1P09429 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HMGB1P09429 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
HMGB1P09429 AL121839.2-201ENST00000565058 6943 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms