Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
RFX4Q33E94 OR8V1P-201ENST00000395193 873 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 AP000580.1-201ENST00000404439 358 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 PPP2R2DP1-201ENST00000420526 637 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 AL034379.1-201ENST00000423216 253 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 TNPO1P1-201ENST00000423641 1138 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.78□□□□□ -1.64
RFX4Q33E94 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.78□□□□□ -1.64
RFX4Q33E94 AC002504.1-201ENST00000438281 691 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC4.78□□□□□ -1.64
RFX4Q33E94 RPL7AP61-201ENST00000443410 636 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 AC004980.3-201ENST00000447046 365 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC4.78□□□□□ -1.64
RFX4Q33E94 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.78□□□□□ -1.64
RFX4Q33E94 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.78□□□□□ -1.64
RFX4Q33E94 AC091180.1-201ENST00000462104 372 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 AP000942.1-201ENST00000463969 747 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 RPL7P40-201ENST00000481703 745 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.78□□□□□ -1.64
RFX4Q33E94 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.78□□□□□ -1.64
RFX4Q33E94 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.78□□□□□ -1.64
RFX4Q33E94 RFPL4AP5-201ENST00000514977 504 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.78□□□□□ -1.64
RFX4Q33E94 YWHABP2-201ENST00000540201 713 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC4.78□□□□□ -1.64
RFX4Q33E94 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC4.78□□□□□ -1.64
RFX4Q33E94 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC4.78□□□□□ -1.64
RFX4Q33E94 AL359742.1-201ENST00000622497 540 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
RFX4Q33E94 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
RFX4Q33E94 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
RFX4Q33E94 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
RFX4Q33E94 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
RFX4Q33E94 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
RFX4Q33E94 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
RFX4Q33E94 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.78□□□□□ -1.64
RFX4Q33E94 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.78□□□□□ -1.64
RFX4Q33E94 AC123912.3-201ENST00000600907 1367 ntBASIC4.78□□□□□ -1.64
RFX4Q33E94 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.65
RFX4Q33E94 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.77□□□□□ -1.65
RFX4Q33E94 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
RFX4Q33E94 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.77□□□□□ -1.65
RFX4Q33E94 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
RFX4Q33E94 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
RFX4Q33E94 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
RFX4Q33E94 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
RFX4Q33E94 PPCS-201ENST00000372556 984 ntTSL 2 BASIC4.77□□□□□ -1.65
RFX4Q33E94 MIR621-201ENST00000384919 96 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 AC007068.1-201ENST00000396690 844 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.77□□□□□ -1.65
RFX4Q33E94 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 IPPKP1-201ENST00000422501 768 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 SUMO2P3-201ENST00000438311 288 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.77□□□□□ -1.65
RFX4Q33E94 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
RFX4Q33E94 MRPL48P1-201ENST00000445390 636 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC084754.1-201ENST00000463466 464 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 BLNK-209ENST00000495266 440 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC093890.1-201ENST00000502554 540 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 AC097173.1-201ENST00000505862 819 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.77□□□□□ -1.65
RFX4Q33E94 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC4.77□□□□□ -1.65
RFX4Q33E94 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AL049830.4-201ENST00000555149 351 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 NDUFB4P11-201ENST00000560510 395 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.77□□□□□ -1.65
RFX4Q33E94 AC027243.2-201ENST00000602530 724 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 AL357153.4-201ENST00000620487 1016 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 TMEM30CP-203ENST00000637814 1035 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.77□□□□□ -1.65
RFX4Q33E94 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.77□□□□□ -1.65
RFX4Q33E94 TTC39DP-201ENST00000416781 1688 ntBASIC4.77□□□□□ -1.65
RFX4Q33E94 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
RFX4Q33E94 LINC01355-201ENST00000566551 5444 ntBASIC4.76□□□□□ -1.65
RFX4Q33E94 MAPK10-286ENST00000641208 8747 ntBASIC4.76□□□□□ -1.65
RFX4Q33E94 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
RFX4Q33E94 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
RFX4Q33E94 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms