Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MIR191-201ENST00000384873 92 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA3P55318 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 AL592291.1-201ENST00000403830 352 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC3.78□□□□□ -1.8
FOXA3P55318 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA3P55318 E2F6P2-201ENST00000420708 748 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AL358176.3-201ENST00000420757 454 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AL034379.1-201ENST00000423216 253 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC3.78□□□□□ -1.8
FOXA3P55318 AC013410.1-201ENST00000436223 1232 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AMYP1-201ENST00000440059 1023 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 HMGB3P9-201ENST00000441799 583 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AC019185.1-201ENST00000442718 389 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 LRRC37A14P-201ENST00000452297 462 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AC104634.1-201ENST00000452720 462 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AC068228.1-201ENST00000461723 211 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 RN7SL517P-201ENST00000462240 305 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
FOXA3P55318 HSD3BP3-201ENST00000514706 994 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC3.78□□□□□ -1.8
FOXA3P55318 SNORA43.3-201ENST00000517240 103 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AF186190.1-201ENST00000517470 480 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA3P55318 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC3.78□□□□□ -1.8
FOXA3P55318 AC024940.3-201ENST00000538551 316 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXA3P55318 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC3.78□□□□□ -1.8
FOXA3P55318 AC121758.1-202ENST00000556917 658 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC3.78□□□□□ -1.8
FOXA3P55318 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
FOXA3P55318 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA3P55318 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA3P55318 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA3P55318 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
FOXA3P55318 DDX18P3-201ENST00000404856 2007 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
FOXA3P55318 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
FOXA3P55318 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 YES1P1-201ENST00000418510 1628 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXA3P55318 DDX18P5-201ENST00000534547 1306 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 AC068446.1-201ENST00000556425 1549 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 AC008549.2-201ENST00000333482 706 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 MIR375-201ENST00000362103 64 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 RN7SKP250-201ENST00000363924 321 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXA3P55318 AL133388.1-201ENST00000404509 287 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 RN7SKP86-201ENST00000410454 332 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 CEACAMP8-201ENST00000413902 580 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 SLC20A1P1-201ENST00000413906 956 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 PTP4A1P1-201ENST00000420539 515 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA3P55318 EIF4A1P7-201ENST00000421800 1220 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 FABP7P1-201ENST00000424004 391 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 AL662874.1-201ENST00000426065 230 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXA3P55318 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXA3P55318 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA3P55318 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXA3P55318 OTX2P1-201ENST00000450956 354 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA3P55318 AK5-208ENST00000478255 556 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXA3P55318 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXA3P55318 RNA5SP360-201ENST00000516555 118 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC027369.2-201ENST00000528030 440 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC107958.1-201ENST00000556576 290 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 RPL21P7-201ENST00000557463 483 ntBASIC3.77□□□□□ -1.81
FOXA3P55318 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA3P55318 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXA3P55318 AC011500.1-201ENST00000601963 469 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms