Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MTCO1P35-201ENST00000515270 228 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 MED28P5-201ENST00000528254 438 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 AL049839.1-201ENST00000556151 657 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
BRCA1P38398 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.05□□□□□ -1.44
BRCA1P38398 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.05□□□□□ -1.44
BRCA1P38398 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC6.05□□□□□ -1.44
BRCA1P38398 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC6.05□□□□□ -1.44
BRCA1P38398 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
BRCA1P38398 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
BRCA1P38398 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
BRCA1P38398 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
BRCA1P38398 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
BRCA1P38398 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.05□□□□□ -1.44
BRCA1P38398 AC007382.1-201ENST00000624376 2618 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
BRCA1P38398 AC104964.3-201ENST00000606115 2860 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
BRCA1P38398 LINC01881-201ENST00000416103 412 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 AC114755.5-201ENST00000447760 831 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.05□□□□□ -1.44
BRCA1P38398 SUMO2P19-201ENST00000518920 295 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.05□□□□□ -1.44
BRCA1P38398 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC6.05□□□□□ -1.44
BRCA1P38398 AL022401.1-201ENST00000619498 108 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 AC002044.3-201ENST00000623314 541 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 AC008785.1-201ENST00000624475 456 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.04□□□□□ -1.44
BRCA1P38398 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
BRCA1P38398 CARF-208ENST00000428585 2513 ntTSL 2 BASIC6.04□□□□□ -1.44
BRCA1P38398 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
BRCA1P38398 POMP-202ENST00000460403 1428 ntTSL 3 BASIC6.04□□□□□ -1.44
BRCA1P38398 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC6.04□□□□□ -1.44
BRCA1P38398 RBPJP2-201ENST00000618187 1444 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
BRCA1P38398 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 AL359837.1-201ENST00000381357 287 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.04□□□□□ -1.44
BRCA1P38398 BMS1P19-201ENST00000433925 393 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 AL691482.1-201ENST00000453255 87 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 AC108751.3-201ENST00000461814 1020 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 OR2A3P-201ENST00000493774 953 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 AP002812.1-201ENST00000495378 474 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 RPSAP51-201ENST00000497462 645 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC6.04□□□□□ -1.44
BRCA1P38398 MIR5699-201ENST00000578903 90 ntBASIC6.04□□□□□ -1.44
BRCA1P38398 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC6.04□□□□□ -1.44
BRCA1P38398 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
BRCA1P38398 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC6.04□□□□□ -1.44
BRCA1P38398 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
BRCA1P38398 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC6.03□□□□□ -1.44
BRCA1P38398 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
BRCA1P38398 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.03□□□□□ -1.44
BRCA1P38398 GAPDHP49-201ENST00000421421 961 ntBASIC6.03□□□□□ -1.44
BRCA1P38398 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.03□□□□□ -1.44
BRCA1P38398 snoU13.22-201ENST00000459428 104 ntBASIC6.03□□□□□ -1.44
BRCA1P38398 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.03□□□□□ -1.44
BRCA1P38398 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
BRCA1P38398 MRPL49P2-201ENST00000521066 465 ntBASIC6.03□□□□□ -1.44
BRCA1P38398 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.03□□□□□ -1.44
BRCA1P38398 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.03□□□□□ -1.44
BRCA1P38398 AC106785.1-201ENST00000565935 262 ntBASIC6.03□□□□□ -1.44
BRCA1P38398 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC6.03□□□□□ -1.44
BRCA1P38398 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.03□□□□□ -1.44
BRCA1P38398 AC004232.3-201ENST00000622977 525 ntBASIC6.03□□□□□ -1.44
BRCA1P38398 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.03□□□□□ -1.44
BRCA1P38398 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
BRCA1P38398 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
BRCA1P38398 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.03□□□□□ -1.44
BRCA1P38398 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BRCA1P38398 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
BRCA1P38398 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
BRCA1P38398 RNU1-64P-201ENST00000365443 163 ntBASIC6.02□□□□□ -1.44
BRCA1P38398 ATP5HP3-201ENST00000396994 486 ntBASIC6.02□□□□□ -1.44
BRCA1P38398 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.44
BRCA1P38398 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms