Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
MSX2P35548 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 AL442128.2-201ENST00000620246 1824 ntBASIC5.81□□□□□ -1.48
MSX2P35548 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 AC239868.2-201ENST00000564237 4527 ntBASIC5.81□□□□□ -1.48
MSX2P35548 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 AC010132.2-201ENST00000295493 1043 ntBASIC5.81□□□□□ -1.48
MSX2P35548 OR5H15-201ENST00000383696 930 ntBASIC5.81□□□□□ -1.48
MSX2P35548 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
MSX2P35548 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 AC024937.2-201ENST00000411669 1242 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC006366.1-201ENST00000422002 759 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 GTF2IP2-201ENST00000424290 697 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AHCYP8-201ENST00000425108 209 ntBASIC5.81□□□□□ -1.48
MSX2P35548 RPS7P14-201ENST00000426405 583 ntBASIC5.81□□□□□ -1.48
MSX2P35548 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 MTND1P32-201ENST00000433043 938 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC073410.1-201ENST00000435125 589 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 CASP3P1-201ENST00000446037 609 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AL020997.1-201ENST00000446554 349 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AL162739.1-201ENST00000450606 307 ntBASIC5.81□□□□□ -1.48
MSX2P35548 SLAMF6P1-201ENST00000451067 602 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 EIF3LP2-201ENST00000457262 807 ntBASIC5.81□□□□□ -1.48
MSX2P35548 CST12P-201ENST00000457644 362 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC004890.1-201ENST00000461005 181 ntBASIC5.81□□□□□ -1.48
MSX2P35548 RN7SL70P-201ENST00000478322 302 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC119751.1-201ENST00000513357 765 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX2P35548 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX2P35548 AC060788.1-201ENST00000521318 469 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AL133399.1-201ENST00000527476 298 ntBASIC5.81□□□□□ -1.48
MSX2P35548 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 CBX3P7-201ENST00000532876 502 ntBASIC5.81□□□□□ -1.48
MSX2P35548 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 AC005519.1-201ENST00000554490 601 ntBASIC5.81□□□□□ -1.48
MSX2P35548 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 RN7SL131P-201ENST00000579043 256 ntBASIC5.81□□□□□ -1.48
MSX2P35548 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX2P35548 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 DUXAP11-201ENST00000603858 526 ntBASIC5.81□□□□□ -1.48
MSX2P35548 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.81□□□□□ -1.48
MSX2P35548 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC010738.1-201ENST00000604970 987 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC114477.1-201ENST00000605097 605 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC068944.2-201ENST00000610373 403 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AL137000.1-201ENST00000610528 1244 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AL136097.3-201ENST00000611097 505 ntBASIC5.81□□□□□ -1.48
MSX2P35548 MIR8082-201ENST00000612488 81 ntBASIC5.81□□□□□ -1.48
MSX2P35548 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC122133.1-201ENST00000613964 233 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC048341.3-201ENST00000619323 491 ntBASIC5.81□□□□□ -1.48
MSX2P35548 AC092656.1-203ENST00000624134 423 ntBASIC5.81□□□□□ -1.48
MSX2P35548 OR1S1-201ENST00000624470 978 ntBASIC5.81□□□□□ -1.48
MSX2P35548 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
MSX2P35548 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX2P35548 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX2P35548 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC004014.2-201ENST00000623718 5122 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC016745.2-201ENST00000608834 3443 ntBASIC5.8□□□□□ -1.48
MSX2P35548 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 AC005224.3-201ENST00000584683 2140 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms