Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A1P20908 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A1P20908 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A1P20908 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A1P20908 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.89□□□□□ -1.63
COL5A1P20908 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.89□□□□□ -1.63
COL5A1P20908 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A1P20908 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.89□□□□□ -1.63
COL5A1P20908 TXNP5-201ENST00000441043 315 ntBASIC4.89□□□□□ -1.63
COL5A1P20908 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.89□□□□□ -1.63
COL5A1P20908 RN7SL443P-201ENST00000464331 290 ntBASIC4.89□□□□□ -1.63
COL5A1P20908 AC011005.3-201ENST00000491624 395 ntBASIC4.89□□□□□ -1.63
COL5A1P20908 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.89□□□□□ -1.63
COL5A1P20908 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.89□□□□□ -1.63
COL5A1P20908 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A1P20908 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.89□□□□□ -1.63
COL5A1P20908 RN7SKP122-201ENST00000515923 296 ntBASIC4.89□□□□□ -1.63
COL5A1P20908 AP002981.1-201ENST00000517692 975 ntBASIC4.89□□□□□ -1.63
COL5A1P20908 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A1P20908 MIR4284-201ENST00000578924 81 ntBASIC4.89□□□□□ -1.63
COL5A1P20908 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC4.89□□□□□ -1.63
COL5A1P20908 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
COL5A1P20908 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A1P20908 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A1P20908 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.89□□□□□ -1.63
COL5A1P20908 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A1P20908 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A1P20908 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC4.89□□□□□ -1.63
COL5A1P20908 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.89□□□□□ -1.63
COL5A1P20908 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
COL5A1P20908 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.88□□□□□ -1.63
COL5A1P20908 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.88□□□□□ -1.63
COL5A1P20908 AC013356.1-201ENST00000489027 564 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 RPS12P31-201ENST00000491419 398 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 HMGB1P23-201ENST00000518743 568 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 MIR6839-201ENST00000620425 113 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 CR1-203ENST00000367051 7469 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
COL5A1P20908 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.88□□□□□ -1.63
COL5A1P20908 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.88□□□□□ -1.63
COL5A1P20908 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
COL5A1P20908 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.88□□□□□ -1.63
COL5A1P20908 RN7SKP153-201ENST00000365026 316 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 SNORA57.1-201ENST00000391227 145 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 BX510359.2-201ENST00000417920 305 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 TDGF1P1-201ENST00000445734 527 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 OR11I1P-201ENST00000486033 954 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 RN7SL441P-201ENST00000492388 296 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 MRPS33P2-201ENST00000507850 322 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 IGKV2D-10-201ENST00000520194 281 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 AC022360.1-201ENST00000521058 340 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.88□□□□□ -1.63
COL5A1P20908 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.88□□□□□ -1.63
COL5A1P20908 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.88□□□□□ -1.63
COL5A1P20908 BNIP3P33-201ENST00000598912 569 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 MIR92B-201ENST00000607575 96 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 AC091932.2-201ENST00000623014 291 ntBASIC4.88□□□□□ -1.63
COL5A1P20908 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.88□□□□□ -1.63
COL5A1P20908 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC4.88□□□□□ -1.63
COL5A1P20908 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
COL5A1P20908 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A1P20908 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC4.87□□□□□ -1.63
COL5A1P20908 AP000641.1-201ENST00000531988 1639 ntBASIC4.87□□□□□ -1.63
COL5A1P20908 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC4.87□□□□□ -1.63
COL5A1P20908 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
COL5A1P20908 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A1P20908 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.87□□□□□ -1.63
COL5A1P20908 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
COL5A1P20908 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A1P20908 IGHV5-78-201ENST00000450948 295 ntBASIC4.87□□□□□ -1.63
COL5A1P20908 AURKAPS2-201ENST00000454983 333 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms