Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5□□□□□ -1.61
COL6A3P12111 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC5□□□□□ -1.61
COL6A3P12111 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5□□□□□ -1.61
COL6A3P12111 AL049839.1-201ENST00000556151 657 ntBASIC5□□□□□ -1.61
COL6A3P12111 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5□□□□□ -1.61
COL6A3P12111 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5□□□□□ -1.61
COL6A3P12111 AC233263.6-201ENST00000631132 1963 ntBASIC5□□□□□ -1.61
COL6A3P12111 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5□□□□□ -1.61
COL6A3P12111 MIR1289-1-201ENST00000408836 144 ntBASIC5□□□□□ -1.61
COL6A3P12111 AC124944.2-201ENST00000429866 1242 ntBASIC5□□□□□ -1.61
COL6A3P12111 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5□□□□□ -1.61
COL6A3P12111 PLGLA-201ENST00000465668 449 ntBASIC5□□□□□ -1.61
COL6A3P12111 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5□□□□□ -1.61
COL6A3P12111 CAB39P1-201ENST00000502277 460 ntBASIC5□□□□□ -1.61
COL6A3P12111 AC110768.1-201ENST00000509222 400 ntBASIC5□□□□□ -1.61
COL6A3P12111 SOD1P3-201ENST00000518682 454 ntBASIC5□□□□□ -1.61
COL6A3P12111 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5□□□□□ -1.61
COL6A3P12111 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5□□□□□ -1.61
COL6A3P12111 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A3P12111 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A3P12111 UNC79-201ENST00000256339 8400 ntAPPRIS P2 TSL 5 BASIC4.99□□□□□ -1.61
COL6A3P12111 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
COL6A3P12111 AC006210.2-201ENST00000367074 1545 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 OR52B5P-204ENST00000641744 3467 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 AC104964.2-201ENST00000562242 4641 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A3P12111 AC104978.1-201ENST00000449387 391 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 RPL5P32-201ENST00000454085 879 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A3P12111 AC026427.2-201ENST00000506228 536 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 AC098976.1-201ENST00000513014 541 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 OR7E10P-201ENST00000526420 991 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A3P12111 U6.105-201ENST00000637379 88 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 AP000866.6-201ENST00000638898 3579 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 AC092162.3-201ENST00000624511 1624 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 OR56B2P-202ENST00000641377 2453 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A3P12111 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.99□□□□□ -1.61
COL6A3P12111 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A3P12111 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 RN7SKP33-201ENST00000410942 340 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.99□□□□□ -1.61
COL6A3P12111 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.99□□□□□ -1.61
COL6A3P12111 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A3P12111 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A3P12111 AL391261.4-201ENST00000616012 481 ntBASIC4.99□□□□□ -1.61
COL6A3P12111 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A3P12111 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A3P12111 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
COL6A3P12111 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 SNORA2.3-201ENST00000383920 135 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL6A3P12111 ATP5HP3-201ENST00000396994 486 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A3P12111 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A3P12111 OR2A3P-201ENST00000493774 953 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.98□□□□□ -1.61
COL6A3P12111 AC096553.1-201ENST00000605169 829 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 AC091979.2-201ENST00000607514 214 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 SORBS2-201ENST00000284776 5996 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 PCDH15-224ENST00000612394 5765 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
COL6A3P12111 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A3P12111 TTC41P-205ENST00000551270 3963 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A3P12111 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.98□□□□□ -1.61
COL6A3P12111 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A3P12111 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC4.98□□□□□ -1.61
COL6A3P12111 AC009027.1-201ENST00000604510 479 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A3P12111 PLXNA2-201ENST00000367033 11444 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 AC079298.1-201ENST00000625026 1619 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms