Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC2.16□□□□□ -2.06
USH2AO75445 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC2.16□□□□□ -2.06
USH2AO75445 RN7SL652P-201ENST00000577769 300 ntBASIC2.16□□□□□ -2.06
USH2AO75445 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 ZNF566-204ENST00000434377 5197 ntAPPRIS P3 TSL 2 BASIC2.16□□□□□ -2.06
USH2AO75445 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC2.16□□□□□ -2.06
USH2AO75445 BDP1-201ENST00000358731 11073 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 PKD1L2-203ENST00000525539 7379 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 AL356095.1-201ENST00000417217 199 ntBASIC2.16□□□□□ -2.06
USH2AO75445 RNF10P1-201ENST00000418589 369 ntBASIC2.16□□□□□ -2.06
USH2AO75445 RPS29P17-201ENST00000430795 166 ntBASIC2.16□□□□□ -2.06
USH2AO75445 MRPL48P1-201ENST00000445390 636 ntBASIC2.16□□□□□ -2.06
USH2AO75445 SCARNA20.4-201ENST00000516969 131 ntBASIC2.16□□□□□ -2.06
USH2AO75445 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC2.16□□□□□ -2.06
USH2AO75445 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.16□□□□□ -2.06
USH2AO75445 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 AL592182.3-201ENST00000642132 3304 ntBASIC2.16□□□□□ -2.06
USH2AO75445 ALB-220ENST00000621628 1606 ntTSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC2.16□□□□□ -2.06
USH2AO75445 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 AP000756.2-201ENST00000624168 2567 ntBASIC2.16□□□□□ -2.06
USH2AO75445 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC2.16□□□□□ -2.06
USH2AO75445 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
USH2AO75445 PIK3C2B-202ENST00000367187 7686 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 TENM2-207ENST00000520394 8034 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 HMGB3P5-201ENST00000428894 612 ntBASIC2.15□□□□□ -2.06
USH2AO75445 AC007389.2-201ENST00000434630 306 ntBASIC2.15□□□□□ -2.06
USH2AO75445 AL161722.2-201ENST00000434731 981 ntBASIC2.15□□□□□ -2.06
USH2AO75445 FTH1P16-201ENST00000435241 552 ntBASIC2.15□□□□□ -2.06
USH2AO75445 AC046176.1-201ENST00000435260 1170 ntBASIC2.15□□□□□ -2.06
USH2AO75445 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC2.15□□□□□ -2.06
USH2AO75445 PDSS1P2-201ENST00000449397 678 ntBASIC2.15□□□□□ -2.06
USH2AO75445 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC2.15□□□□□ -2.06
USH2AO75445 OR4A43P-201ENST00000532938 908 ntBASIC2.15□□□□□ -2.06
USH2AO75445 EIF1P5-201ENST00000585002 234 ntBASIC2.15□□□□□ -2.06
USH2AO75445 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 AC012442.3-202ENST00000636742 206 ntBASIC2.15□□□□□ -2.06
USH2AO75445 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 ST7-212ENST00000422922 1887 ntTSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 SHANK2-218ENST00000601538 9062 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 AC073346.2-201ENST00000624724 2058 ntBASIC2.15□□□□□ -2.06
USH2AO75445 FXR1-202ENST00000357559 8711 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 AL079305.1-201ENST00000623159 3008 ntBASIC2.15□□□□□ -2.06
USH2AO75445 OR51H2P-202ENST00000641424 3046 ntBASIC2.15□□□□□ -2.06
USH2AO75445 CDK6-201ENST00000265734 11612 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 SNORD56.6-201ENST00000384569 71 ntBASIC2.15□□□□□ -2.06
USH2AO75445 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC2.15□□□□□ -2.06
USH2AO75445 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC2.15□□□□□ -2.06
USH2AO75445 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC2.15□□□□□ -2.06
USH2AO75445 RPL36AP41-201ENST00000493820 306 ntBASIC2.15□□□□□ -2.06
USH2AO75445 AC010486.1-201ENST00000511793 424 ntBASIC2.15□□□□□ -2.06
USH2AO75445 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.15□□□□□ -2.06
USH2AO75445 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC2.15□□□□□ -2.06
USH2AO75445 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC2.15□□□□□ -2.06
USH2AO75445 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC2.15□□□□□ -2.06
USH2AO75445 AL139254.3-201ENST00000641097 674 ntBASIC2.15□□□□□ -2.06
USH2AO75445 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
USH2AO75445 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
USH2AO75445 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC2.15□□□□□ -2.07
USH2AO75445 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms