Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.34□□□□□ -1.56
VPS39Q96JC1 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
VPS39Q96JC1 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
VPS39Q96JC1 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.34□□□□□ -1.56
VPS39Q96JC1 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
VPS39Q96JC1 SMG1P4-204ENST00000523028 4131 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 ADAM5-202ENST00000399789 1942 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 RN7SKP292-201ENST00000365522 317 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC007618.1-201ENST00000366455 732 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 HSPA8P15-201ENST00000401676 786 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 OR6E1P-201ENST00000414424 923 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 SDHDP6-201ENST00000414693 480 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 COX5BP7-201ENST00000414780 274 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 GSTM5P1-201ENST00000434751 660 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 RPL23AP19-201ENST00000436229 369 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC002504.1-201ENST00000438281 691 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC105399.1-202ENST00000447303 205 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC069277.2-201ENST00000454211 432 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC007998.1-201ENST00000474156 672 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 CBX1P5-201ENST00000475330 559 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 SNORD46.2-201ENST00000516021 102 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC138832.1-201ENST00000522871 556 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC107918.3-201ENST00000533272 382 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 OR8X1P-201ENST00000534542 869 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AL359219.2-201ENST00000555184 348 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC010547.6-201ENST00000571789 193 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC007620.3-201ENST00000608131 497 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 AC110792.3-201ENST00000595906 1614 ntBASIC5.33□□□□□ -1.56
VPS39Q96JC1 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS39Q96JC1 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.33□□□□□ -1.56
VPS39Q96JC1 BRAFP1-201ENST00000445336 2703 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 OR9K1P-201ENST00000326513 941 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 RPL23AP4-201ENST00000427757 463 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 PCNPP2-201ENST00000441651 455 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 DNAJB5P1-201ENST00000454004 806 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AC079168.1-201ENST00000458741 345 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 RPL7P41-201ENST00000485823 957 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 RN7SL814P-201ENST00000487715 300 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AC022826.1-201ENST00000519383 805 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms