Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 GTF2IP4-201ENST00000453092 2054 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AC234772.1-201ENST00000377927 937 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 OR2W4P-201ENST00000406496 926 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 RPL7P56-201ENST00000429441 717 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 RPL17P2-201ENST00000491913 451 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 SUMO1P1-201ENST00000497904 306 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 HPRT1P1-201ENST00000509498 657 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 RN7SKP265-201ENST00000516448 223 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 MTND2P38-201ENST00000522536 667 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AL110118.1-201ENST00000553543 400 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AC234771.5-201ENST00000600161 514 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AC087683.2-201ENST00000611384 326 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 OR11H2-202ENST00000641517 1085 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 LINC01739-205ENST00000641890 573 ntBASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMC1BQ8NDV3 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.9□□□□□ -1.31
SMC1BQ8NDV3 AC093297.3-201ENST00000607056 2517 ntBASIC6.9□□□□□ -1.31
SMC1BQ8NDV3 CASC19-281ENST00000642118 1554 ntBASIC6.9□□□□□ -1.31
SMC1BQ8NDV3 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.9□□□□□ -1.31
SMC1BQ8NDV3 AC005332.9-201ENST00000620266 2921 ntBASIC6.9□□□□□ -1.31
SMC1BQ8NDV3 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SMC1BQ8NDV3 AC105235.1-201ENST00000623208 1816 ntBASIC6.9□□□□□ -1.31
SMC1BQ8NDV3 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 U3.2-201ENST00000362981 210 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 RNU1-32P-201ENST00000363937 159 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 RNU6-316P-201ENST00000391027 107 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 NPM1P37-201ENST00000403105 874 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 RN7SKP27-201ENST00000410684 333 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AL354868.1-201ENST00000417077 482 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC108075.1-201ENST00000424692 529 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AL160175.1-201ENST00000428124 247 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 USP9YP9-201ENST00000429406 715 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 RBMY2QP-201ENST00000429799 1147 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC092647.3-201ENST00000443044 633 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AL035090.1-201ENST00000454835 332 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC092324.1-201ENST00000468671 324 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 BX284632.1-201ENST00000478218 541 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 SYT14P1-201ENST00000481459 721 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 PPP1R11P1-201ENST00000486095 376 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 RPL32P33-201ENST00000487023 394 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC013701.1-201ENST00000522657 465 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC084824.2-201ENST00000548906 345 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AL121579.2-201ENST00000555466 590 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AP000919.1-202ENST00000581139 1264 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC063977.5-201ENST00000601044 974 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 RPP40P2-201ENST00000603596 712 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AL359704.2-201ENST00000604335 521 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC012254.5-201ENST00000623573 478 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AL078595.3-201ENST00000623815 1166 ntBASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.89□□□□□ -1.31
SMC1BQ8NDV3 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 300.5 ms