Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NMNAT1P1-201ENST00000554095 876 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 MIR7853-201ENST00000584820 132 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 AL590392.1-201ENST00000604960 446 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 AC079298.1-201ENST00000625026 1619 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 RPL19P16-201ENST00000433839 588 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 KCTD10P1-201ENST00000434203 625 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 ARL2BPP10-201ENST00000446487 531 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 AC067959.1-201ENST00000604334 379 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 AC093388.1-201ENST00000609166 430 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 AC092681.1-201ENST00000297369 291 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 U3.22-201ENST00000391120 215 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 AC004074.1-201ENST00000421810 1063 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 AC007559.1-201ENST00000428736 355 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 RPL12P17-201ENST00000432393 498 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 RN7SKP276-201ENST00000516242 268 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 IGHVIII-2-1-201ENST00000518843 291 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 AC125494.2-201ENST00000602431 657 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 AC010632.3-201ENST00000611377 369 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 AC004076.2-201ENST00000620532 3323 ntBASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC88AQ3V6T2 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 SNORA66-201ENST00000384792 133 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AC090018.1-201ENST00000434369 367 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 MTND2P40-201ENST00000436718 841 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 RNA5SP143-201ENST00000516936 115 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 HMGB1P23-201ENST00000518743 568 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AL110118.1-201ENST00000553543 400 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AC105129.1-201ENST00000560250 297 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 VN1R85P-201ENST00000601587 426 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 ASNSP1-204ENST00000641977 1664 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 RN7SKP263-201ENST00000411194 309 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AL359265.2-201ENST00000434367 631 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AC091180.1-201ENST00000462104 372 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AC097173.1-201ENST00000505862 819 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 RN7SKP92-201ENST00000517266 244 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 RPL26P30-202ENST00000602923 645 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 AC008814.1-201ENST00000603797 406 ntBASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC88AQ3V6T2 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms