Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 RNA5SP234-201ENST00000363916 119 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AC013442.1-201ENST00000397347 228 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 ADAM24P-201ENST00000398655 2101 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 MORF4L1P7-201ENST00000426038 703 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 C4BPAP2-201ENST00000428434 478 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 BX276092.6-201ENST00000430476 250 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AL162739.1-201ENST00000450606 307 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 BX276092.8-201ENST00000455722 250 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AC015908.1-201ENST00000478739 476 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AC008629.2-201ENST00000503783 483 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AC010468.3-201ENST00000508225 458 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 SNORA76.2-201ENST00000517095 137 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 SS18L2P2-201ENST00000583960 235 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 MTCO3P22-201ENST00000603219 784 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 uc_338.26-201ENST00000612659 160 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 AL645927.2-201ENST00000618350 349 ntBASIC5.49□□□□□ -1.53
COL28A1Q2UY09 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL28A1Q2UY09 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC125336.1-201ENST00000508893 2827 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC012618.3-205ENST00000637896 1496 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 RNA5SP105-201ENST00000391123 113 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 PTP4A1P1-201ENST00000420539 515 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 COX6CP17-201ENST00000421389 185 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AL121882.1-201ENST00000422893 417 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 CYCSP6-201ENST00000434498 302 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 OR52B5P-201ENST00000435337 951 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 SCAND3P1-201ENST00000439854 1060 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 RPS29P33-201ENST00000456717 146 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 ACA64.4-201ENST00000459070 127 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC092905.1-201ENST00000467527 949 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 RN7SL51P-201ENST00000468230 285 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC078857.1-201ENST00000469870 667 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 OR11I1P-201ENST00000486033 954 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC104629.1-201ENST00000494226 508 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC034244.2-201ENST00000514668 858 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms