Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.62□□□□□ -1.67
FOXF1Q12946 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.62□□□□□ -1.67
FOXF1Q12946 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXF1Q12946 AC108359.1-201ENST00000616451 1211 ntBASIC4.62□□□□□ -1.67
FOXF1Q12946 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXF1Q12946 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXF1Q12946 SAMMSON-227ENST00000642114 1199 ntBASIC4.62□□□□□ -1.67
FOXF1Q12946 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXF1Q12946 Z95331.1-201ENST00000623075 23112 ntBASIC4.62□□□□□ -1.67
FOXF1Q12946 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXF1Q12946 AC109780.1-201ENST00000451768 1344 ntBASIC4.62□□□□□ -1.67
FOXF1Q12946 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXF1Q12946 AC022417.1-201ENST00000624768 1303 ntBASIC4.62□□□□□ -1.67
FOXF1Q12946 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
FOXF1Q12946 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXF1Q12946 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.62□□□□□ -1.67
FOXF1Q12946 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXF1Q12946 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXF1Q12946 AC063976.2-201ENST00000425667 3556 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
FOXF1Q12946 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXF1Q12946 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
FOXF1Q12946 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
FOXF1Q12946 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
FOXF1Q12946 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.61□□□□□ -1.67
FOXF1Q12946 U3.32-201ENST00000408116 212 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 RNU4-34P-201ENST00000410431 124 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 DPPA2P3-201ENST00000411853 655 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 COX5BP7-201ENST00000414780 274 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.61□□□□□ -1.67
FOXF1Q12946 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.61□□□□□ -1.67
FOXF1Q12946 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.61□□□□□ -1.67
FOXF1Q12946 AC097484.1-201ENST00000471148 389 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXF1Q12946 AC023424.1-201ENST00000496058 459 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 MYL12BP2-201ENST00000503948 512 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 AC010350.1-201ENST00000504908 231 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.61□□□□□ -1.67
FOXF1Q12946 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXF1Q12946 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.61□□□□□ -1.67
FOXF1Q12946 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.61□□□□□ -1.67
FOXF1Q12946 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXF1Q12946 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXF1Q12946 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 AC016839.1-201ENST00000578162 867 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 AC011447.4-201ENST00000587562 111 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 AC006116.3-201ENST00000592968 361 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 AC009163.6-201ENST00000612367 342 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 LINC01739-205ENST00000641890 573 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.61□□□□□ -1.67
FOXF1Q12946 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 AC083843.2-201ENST00000568248 6253 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXF1Q12946 AL031595.2-201ENST00000624215 19071 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXF1Q12946 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.61□□□□□ -1.67
FOXF1Q12946 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
FOXF1Q12946 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
FOXF1Q12946 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
FOXF1Q12946 AP001157.1-201ENST00000550837 2339 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.6□□□□□ -1.67
FOXF1Q12946 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.6□□□□□ -1.67
FOXF1Q12946 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
FOXF1Q12946 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
FOXF1Q12946 RNA5SP507-201ENST00000363603 121 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
FOXF1Q12946 Z68694.1-201ENST00000413929 841 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 GNG5P5-201ENST00000420444 220 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.6□□□□□ -1.67
FOXF1Q12946 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.6□□□□□ -1.67
FOXF1Q12946 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.6□□□□□ -1.67
FOXF1Q12946 AC245028.2-201ENST00000458673 253 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 AC093763.2-201ENST00000505334 1223 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 AC004980.4-201ENST00000513375 203 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.6□□□□□ -1.67
FOXF1Q12946 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.6□□□□□ -1.67
FOXF1Q12946 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.6□□□□□ -1.67
FOXF1Q12946 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.6□□□□□ -1.67
FOXF1Q12946 AL627230.1-201ENST00000613077 211 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 AL591926.8-201ENST00000616876 211 ntBASIC4.6□□□□□ -1.67
FOXF1Q12946 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.6□□□□□ -1.67
FOXF1Q12946 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
FOXF1Q12946 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
FOXF1Q12946 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC4.6□□□□□ -1.67
FOXF1Q12946 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
FOXF1Q12946 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.6□□□□□ -1.67
FOXF1Q12946 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.6□□□□□ -1.67
FOXF1Q12946 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms