Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC6.08□□□□□ -1.44
BRCA1P38398 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC6.08□□□□□ -1.44
BRCA1P38398 BNIP3P33-201ENST00000598912 569 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 AL591034.3-201ENST00000605511 685 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC6.08□□□□□ -1.44
BRCA1P38398 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.08□□□□□ -1.44
BRCA1P38398 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC6.08□□□□□ -1.44
BRCA1P38398 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.08□□□□□ -1.44
BRCA1P38398 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.08□□□□□ -1.44
BRCA1P38398 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 ECM1P2-201ENST00000503354 1577 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.08□□□□□ -1.44
BRCA1P38398 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
BRCA1P38398 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
BRCA1P38398 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.07□□□□□ -1.44
BRCA1P38398 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 U3.10-201ENST00000364459 214 ntBASIC6.07□□□□□ -1.44
BRCA1P38398 RNA5SP171-201ENST00000391071 115 ntBASIC6.07□□□□□ -1.44
BRCA1P38398 SNORA48.7-201ENST00000391302 135 ntBASIC6.07□□□□□ -1.44
BRCA1P38398 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.07□□□□□ -1.44
BRCA1P38398 AL645608.4-201ENST00000423619 154 ntBASIC6.07□□□□□ -1.44
BRCA1P38398 AC010618.1-201ENST00000469924 477 ntBASIC6.07□□□□□ -1.44
BRCA1P38398 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC6.07□□□□□ -1.44
BRCA1P38398 AL356608.1-201ENST00000610034 820 ntBASIC6.07□□□□□ -1.44
BRCA1P38398 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC6.07□□□□□ -1.44
BRCA1P38398 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC6.07□□□□□ -1.44
BRCA1P38398 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.07□□□□□ -1.44
BRCA1P38398 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.07□□□□□ -1.44
BRCA1P38398 SMG1P7-201ENST00000565246 2704 ntBASIC6.07□□□□□ -1.44
BRCA1P38398 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC6.07□□□□□ -1.44
BRCA1P38398 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC6.07□□□□□ -1.44
BRCA1P38398 RPS5P7-201ENST00000456664 608 ntBASIC6.07□□□□□ -1.44
BRCA1P38398 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC6.07□□□□□ -1.44
BRCA1P38398 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC6.07□□□□□ -1.44
BRCA1P38398 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC6.07□□□□□ -1.44
BRCA1P38398 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC6.07□□□□□ -1.44
BRCA1P38398 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.07□□□□□ -1.44
BRCA1P38398 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
BRCA1P38398 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 LCOR-201ENST00000286067 4542 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC6.06□□□□□ -1.44
BRCA1P38398 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
BRCA1P38398 NBPF8-201ENST00000583271 5330 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.06□□□□□ -1.44
BRCA1P38398 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
BRCA1P38398 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 RNU1-59P-201ENST00000364829 162 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.06□□□□□ -1.44
BRCA1P38398 AC006065.1-201ENST00000422539 802 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC6.06□□□□□ -1.44
BRCA1P38398 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC6.06□□□□□ -1.44
BRCA1P38398 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.06□□□□□ -1.44
BRCA1P38398 SEPT10P1-201ENST00000517342 1162 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC6.06□□□□□ -1.44
BRCA1P38398 RN7SL802P-201ENST00000577858 299 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC6.06□□□□□ -1.44
BRCA1P38398 AL133338.2-201ENST00000604292 736 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC6.06□□□□□ -1.44
BRCA1P38398 U1.25-201ENST00000614085 162 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 U1.34-201ENST00000618578 162 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 U1.31-201ENST00000620022 160 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 AL161637.1-201ENST00000622380 412 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 AL442639.1-201ENST00000625030 1899 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 AC133552.1-201ENST00000569988 4007 ntBASIC6.06□□□□□ -1.44
BRCA1P38398 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC6.06□□□□□ -1.44
BRCA1P38398 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BRCA1P38398 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
BRCA1P38398 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
BRCA1P38398 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
BRCA1P38398 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
BRCA1P38398 SNORA70.4-201ENST00000365509 134 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
BRCA1P38398 AL136116.2-201ENST00000404020 785 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 AL445189.1-201ENST00000405722 338 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 RPS26P38-201ENST00000414476 348 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.05□□□□□ -1.44
BRCA1P38398 FHP1-201ENST00000442741 703 ntBASIC6.05□□□□□ -1.44
BRCA1P38398 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms