Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 AC099654.2-201ENST00000433031 1980 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 AL137058.3-201ENST00000624531 3099 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.7□□□□□ -1.34
HOXC9P31274 RN7SKP145-201ENST00000363291 303 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 RNA5SP223-201ENST00000365174 120 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 SNORA70.6-201ENST00000383934 134 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
HOXC9P31274 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.7□□□□□ -1.34
HOXC9P31274 AC023271.1-201ENST00000445936 1090 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 RAB9BP1-201ENST00000519581 626 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 AC012339.2-201ENST00000523996 453 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC6.7□□□□□ -1.34
HOXC9P31274 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.7□□□□□ -1.34
HOXC9P31274 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC6.7□□□□□ -1.34
HOXC9P31274 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.7□□□□□ -1.34
HOXC9P31274 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.7□□□□□ -1.34
HOXC9P31274 AC138627.1-204ENST00000641894 765 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.7□□□□□ -1.34
HOXC9P31274 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.69□□□□□ -1.34
HOXC9P31274 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.69□□□□□ -1.34
HOXC9P31274 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
HOXC9P31274 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 AL390316.1-201ENST00000406279 553 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.69□□□□□ -1.34
HOXC9P31274 AL136455.1-201ENST00000441083 1240 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 RPL21P133-201ENST00000443666 476 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 VN1R96P-201ENST00000446052 858 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC6.69□□□□□ -1.34
HOXC9P31274 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC6.69□□□□□ -1.34
HOXC9P31274 BX842559.2-201ENST00000451418 605 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.69□□□□□ -1.34
HOXC9P31274 AURKAPS2-201ENST00000454983 333 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 AC011005.3-201ENST00000491624 395 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.69□□□□□ -1.34
HOXC9P31274 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC6.69□□□□□ -1.34
HOXC9P31274 AC022784.5-201ENST00000522241 437 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 TRAV11-201ENST00000539512 339 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.69□□□□□ -1.34
HOXC9P31274 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.69□□□□□ -1.34
HOXC9P31274 AC090953.1-201ENST00000604305 1092 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 AC016590.3-201ENST00000611171 753 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC6.69□□□□□ -1.34
HOXC9P31274 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.69□□□□□ -1.34
HOXC9P31274 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 AC073869.10-201ENST00000642016 354 ntBASIC6.69□□□□□ -1.34
HOXC9P31274 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.69□□□□□ -1.34
HOXC9P31274 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
HOXC9P31274 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
HOXC9P31274 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HOXC9P31274 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HOXC9P31274 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HOXC9P31274 AC004158.1-201ENST00000564508 4319 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
HOXC9P31274 AL136116.2-201ENST00000404020 785 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 RPS20P25-201ENST00000412447 352 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 AL359265.2-201ENST00000434367 631 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC6.68□□□□□ -1.34
HOXC9P31274 RPL23AP56-201ENST00000460778 453 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 AC006967.1-201ENST00000467608 589 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.68□□□□□ -1.34
HOXC9P31274 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.68□□□□□ -1.34
HOXC9P31274 AC098976.1-201ENST00000513014 541 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 C1GALT1P3-201ENST00000522049 819 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC6.68□□□□□ -1.34
HOXC9P31274 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.68□□□□□ -1.34
HOXC9P31274 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC6.68□□□□□ -1.34
HOXC9P31274 AC007786.3-201ENST00000615154 596 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC6.68□□□□□ -1.34
HOXC9P31274 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC6.68□□□□□ -1.34
HOXC9P31274 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.68□□□□□ -1.34
HOXC9P31274 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HOXC9P31274 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms