Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.34□□□□□ -1.55
MSH3P20585 AL359513.1-201ENST00000614364 557 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AL356752.1-201ENST00000615844 593 ntBASIC5.34□□□□□ -1.55
MSH3P20585 WBP1LP8-201ENST00000617401 327 ntBASIC5.34□□□□□ -1.55
MSH3P20585 MIR6837-201ENST00000620884 64 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.34□□□□□ -1.55
MSH3P20585 AL391262.2-201ENST00000622466 494 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AL355480.1-201ENST00000629041 99 ntBASIC5.34□□□□□ -1.55
MSH3P20585 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH3P20585 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
MSH3P20585 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
MSH3P20585 AL353796.1-201ENST00000561542 3241 ntBASIC5.34□□□□□ -1.56
MSH3P20585 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.34□□□□□ -1.56
MSH3P20585 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
MSH3P20585 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.56
MSH3P20585 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.33□□□□□ -1.56
MSH3P20585 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.33□□□□□ -1.56
MSH3P20585 RNU6-883P-201ENST00000384597 107 ntBASIC5.33□□□□□ -1.56
MSH3P20585 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
MSH3P20585 RNA5SP487-201ENST00000410186 122 ntBASIC5.33□□□□□ -1.56
MSH3P20585 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.33□□□□□ -1.56
MSH3P20585 NPM1P4-201ENST00000414095 812 ntBASIC5.33□□□□□ -1.56
MSH3P20585 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.33□□□□□ -1.56
MSH3P20585 RPS6P14-201ENST00000425165 719 ntBASIC5.33□□□□□ -1.56
MSH3P20585 FAM96AP1-201ENST00000430879 482 ntBASIC5.33□□□□□ -1.56
MSH3P20585 ZFAND6P1-201ENST00000434138 605 ntBASIC5.33□□□□□ -1.56
MSH3P20585 MTND4P15-201ENST00000437913 1033 ntBASIC5.33□□□□□ -1.56
MSH3P20585 SDR42E1P3-201ENST00000438345 502 ntBASIC5.33□□□□□ -1.56
MSH3P20585 GAPDHP25-201ENST00000447061 1001 ntBASIC5.33□□□□□ -1.56
MSH3P20585 NPM1P19-201ENST00000450070 712 ntBASIC5.33□□□□□ -1.56
MSH3P20585 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.33□□□□□ -1.56
MSH3P20585 RPL31P53-201ENST00000457065 348 ntBASIC5.33□□□□□ -1.56
MSH3P20585 RPL7P39-201ENST00000481157 744 ntBASIC5.33□□□□□ -1.56
MSH3P20585 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.33□□□□□ -1.56
MSH3P20585 RPEP1-201ENST00000504507 658 ntBASIC5.33□□□□□ -1.56
MSH3P20585 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.33□□□□□ -1.56
MSH3P20585 SCARNA20.4-201ENST00000516969 131 ntBASIC5.33□□□□□ -1.56
MSH3P20585 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.33□□□□□ -1.56
MSH3P20585 AC104997.1-201ENST00000519761 717 ntBASIC5.33□□□□□ -1.56
MSH3P20585 MTND1P36-201ENST00000522384 936 ntBASIC5.33□□□□□ -1.56
MSH3P20585 IGKV2-18-201ENST00000522607 343 ntBASIC5.33□□□□□ -1.56
MSH3P20585 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.33□□□□□ -1.56
MSH3P20585 OR11H3P-201ENST00000554547 982 ntBASIC5.33□□□□□ -1.56
MSH3P20585 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 AC007225.2-201ENST00000562529 256 ntBASIC5.33□□□□□ -1.56
MSH3P20585 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.33□□□□□ -1.56
MSH3P20585 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.33□□□□□ -1.56
MSH3P20585 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 AC109583.2-201ENST00000617367 129 ntBASIC5.33□□□□□ -1.56
MSH3P20585 AC135068.5-201ENST00000624197 983 ntBASIC5.33□□□□□ -1.56
MSH3P20585 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.33□□□□□ -1.56
MSH3P20585 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH3P20585 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
MSH3P20585 MTCO1P11-201ENST00000429111 1528 ntBASIC5.33□□□□□ -1.56
MSH3P20585 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
MSH3P20585 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
MSH3P20585 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 Z83820.1-201ENST00000456978 1499 ntBASIC5.32□□□□□ -1.56
MSH3P20585 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
MSH3P20585 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
MSH3P20585 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 RN7SKP162-201ENST00000363605 345 ntBASIC5.32□□□□□ -1.56
MSH3P20585 U3.7-201ENST00000363668 216 ntBASIC5.32□□□□□ -1.56
MSH3P20585 RNA5SP241-201ENST00000391326 114 ntBASIC5.32□□□□□ -1.56
MSH3P20585 DBIP1-201ENST00000401435 260 ntBASIC5.32□□□□□ -1.56
MSH3P20585 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.32□□□□□ -1.56
MSH3P20585 AL390774.1-201ENST00000411924 246 ntBASIC5.32□□□□□ -1.56
MSH3P20585 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH3P20585 GNG5P5-201ENST00000420444 220 ntBASIC5.32□□□□□ -1.56
MSH3P20585 AL390879.2-203ENST00000426943 1121 ntBASIC5.32□□□□□ -1.56
MSH3P20585 HMGN2P27-201ENST00000427352 270 ntBASIC5.32□□□□□ -1.56
MSH3P20585 RPL7AP49-201ENST00000429522 581 ntBASIC5.32□□□□□ -1.56
MSH3P20585 CFL1P1-202ENST00000432948 411 ntBASIC5.32□□□□□ -1.56
MSH3P20585 AL591438.1-201ENST00000433508 581 ntBASIC5.32□□□□□ -1.56
MSH3P20585 AP000949.1-201ENST00000438328 629 ntBASIC5.32□□□□□ -1.56
MSH3P20585 ZNF736P11Y-201ENST00000442535 1213 ntBASIC5.32□□□□□ -1.56
MSH3P20585 ZNF736P12Y-201ENST00000443152 1243 ntBASIC5.32□□□□□ -1.56
MSH3P20585 ZNF736P4Y-201ENST00000454995 1243 ntBASIC5.32□□□□□ -1.56
MSH3P20585 RPL7P40-201ENST00000481703 745 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms