Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR1182-201ENST00000408363 97 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC093655.2-201ENST00000425735 631 ntBASIC4.89□□□□□ -1.63
SDC1P18827 COX6CP13-201ENST00000428703 226 ntBASIC4.89□□□□□ -1.63
SDC1P18827 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 MRPL35P2-201ENST00000448009 511 ntBASIC4.89□□□□□ -1.63
SDC1P18827 RNU6-775P-201ENST00000459318 96 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC091180.1-201ENST00000462104 372 ntBASIC4.89□□□□□ -1.63
SDC1P18827 RPSAP39-201ENST00000467439 883 ntBASIC4.89□□□□□ -1.63
SDC1P18827 RN7SL717P-201ENST00000478343 297 ntBASIC4.89□□□□□ -1.63
SDC1P18827 RPS4XP20-201ENST00000505751 772 ntBASIC4.89□□□□□ -1.63
SDC1P18827 RNU6-551P-201ENST00000516661 103 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC105031.1-201ENST00000518550 476 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC4.89□□□□□ -1.63
SDC1P18827 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.89□□□□□ -1.63
SDC1P18827 LSM3P2-201ENST00000551246 273 ntBASIC4.89□□□□□ -1.63
SDC1P18827 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SDC1P18827 MTATP6P25-201ENST00000574491 261 ntBASIC4.89□□□□□ -1.63
SDC1P18827 SNORD95-201ENST00000579879 68 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 Z95327.3-201ENST00000610385 572 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC109309.2-201ENST00000612597 332 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC004477.3-201ENST00000614061 590 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AP001962.1-201ENST00000624114 559 ntBASIC4.89□□□□□ -1.63
SDC1P18827 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.89□□□□□ -1.63
SDC1P18827 SNORA17.5-201ENST00000630429 132 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC136428.4-201ENST00000634254 1155 ntBASIC4.89□□□□□ -1.63
SDC1P18827 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SDC1P18827 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.89□□□□□ -1.63
SDC1P18827 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.89□□□□□ -1.63
SDC1P18827 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.89□□□□□ -1.63
SDC1P18827 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SDC1P18827 CA1-225ENST00000626824 2405 ntTSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.88□□□□□ -1.63
SDC1P18827 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SDC1P18827 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SDC1P18827 AL731532.2-201ENST00000623542 1953 ntBASIC4.88□□□□□ -1.63
SDC1P18827 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SDC1P18827 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SDC1P18827 RNA5SP183-201ENST00000362452 119 ntBASIC4.88□□□□□ -1.63
SDC1P18827 Y_RNA.62-201ENST00000362840 99 ntBASIC4.88□□□□□ -1.63
SDC1P18827 RAB5CP1-201ENST00000395972 580 ntBASIC4.88□□□□□ -1.63
SDC1P18827 ZNF736P10Y-201ENST00000403990 1110 ntBASIC4.88□□□□□ -1.63
SDC1P18827 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SDC1P18827 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.88□□□□□ -1.63
SDC1P18827 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC4.88□□□□□ -1.63
SDC1P18827 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.88□□□□□ -1.63
SDC1P18827 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 RPL35AP21-201ENST00000437667 333 ntBASIC4.88□□□□□ -1.63
SDC1P18827 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC4.88□□□□□ -1.63
SDC1P18827 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SDC1P18827 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.88□□□□□ -1.63
SDC1P18827 MTND3P6-201ENST00000485242 339 ntBASIC4.88□□□□□ -1.63
SDC1P18827 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
SDC1P18827 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.88□□□□□ -1.63
SDC1P18827 AC090568.1-201ENST00000509499 856 ntBASIC4.88□□□□□ -1.63
SDC1P18827 GTF2F2P1-201ENST00000511083 675 ntBASIC4.88□□□□□ -1.63
SDC1P18827 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 RNU6-751P-201ENST00000516382 101 ntBASIC4.88□□□□□ -1.63
SDC1P18827 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.88□□□□□ -1.63
SDC1P18827 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC4.88□□□□□ -1.63
SDC1P18827 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.88□□□□□ -1.63
SDC1P18827 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.88□□□□□ -1.63
SDC1P18827 AC090888.3-201ENST00000558917 509 ntBASIC4.88□□□□□ -1.63
SDC1P18827 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.88□□□□□ -1.63
SDC1P18827 AC079791.1-201ENST00000605356 973 ntBASIC4.88□□□□□ -1.63
SDC1P18827 RPSAP73-201ENST00000614820 330 ntBASIC4.88□□□□□ -1.63
SDC1P18827 MIR6861-201ENST00000618657 64 ntBASIC4.88□□□□□ -1.63
SDC1P18827 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 AC090527.3-201ENST00000619041 548 ntBASIC4.88□□□□□ -1.63
SDC1P18827 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.88□□□□□ -1.63
SDC1P18827 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SDC1P18827 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SDC1P18827 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.88□□□□□ -1.63
SDC1P18827 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SDC1P18827 THAP12P5-201ENST00000405864 2275 ntBASIC4.88□□□□□ -1.63
SDC1P18827 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.88□□□□□ -1.63
SDC1P18827 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.87□□□□□ -1.63
SDC1P18827 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.87□□□□□ -1.63
SDC1P18827 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
SDC1P18827 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SDC1P18827 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms