Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 USP9YP33-201ENST00000412220 421 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 RPS15AP38-201ENST00000413110 372 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AL161449.1-201ENST00000414531 1199 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 CDK8P2-201ENST00000415020 547 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 RNGTTP1-201ENST00000420965 728 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 CYP4F32P-201ENST00000426492 504 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 OFD1P13Y-201ENST00000431179 1232 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 SEPT7P5-201ENST00000434048 306 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 Z74696.2-201ENST00000436514 498 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC093155.1-201ENST00000440164 826 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 RPL31P44-201ENST00000447680 377 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA3O43365 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 CFTRP1-201ENST00000456646 183 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 MTND1P16-201ENST00000465177 898 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.37□□□□□ -1.55
HOXA3O43365 AC104687.1-201ENST00000485829 412 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC021006.1-201ENST00000489849 553 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 AC109458.1-201ENST00000508858 316 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 CDC42P4-201ENST00000510507 563 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 RPL7L1P4-201ENST00000513004 707 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 NRON-201ENST00000517270 370 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 MTND4LP26-201ENST00000518144 282 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC011853.1-201ENST00000518911 454 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.37□□□□□ -1.55
HOXA3O43365 SMARCE1P4-201ENST00000523647 241 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 OR5G4P-201ENST00000525251 760 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 OR9L1P-201ENST00000529493 933 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA3O43365 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA3O43365 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 AC087683.1-201ENST00000591187 441 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 AC114477.1-201ENST00000605097 605 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 SNORD96A-201ENST00000606577 79 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC087241.4-201ENST00000612441 480 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 AC010678.1-201ENST00000614118 713 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 DCAF13P3-201ENST00000561147 1334 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA3O43365 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 AL353743.4-201ENST00000422653 1547 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA3O43365 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
HOXA3O43365 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 MAPK10-357ENST00000641831 2858 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 SMG1P5-202ENST00000529428 4219 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 SMG1P2-201ENST00000566127 4221 ntBASIC5.37□□□□□ -1.55
HOXA3O43365 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA3O43365 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.36□□□□□ -1.55
HOXA3O43365 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
HOXA3O43365 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA3O43365 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA3O43365 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA3O43365 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA3O43365 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.36□□□□□ -1.55
HOXA3O43365 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA3O43365 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA3O43365 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
HOXA3O43365 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA3O43365 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA3O43365 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA3O43365 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
HOXA3O43365 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
HOXA3O43365 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
HOXA3O43365 Y_RNA.359-201ENST00000365498 102 ntBASIC5.36□□□□□ -1.55
HOXA3O43365 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA3O43365 RNU6-1263P-201ENST00000384601 106 ntBASIC5.36□□□□□ -1.55
HOXA3O43365 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
HOXA3O43365 U3.28-201ENST00000391249 210 ntBASIC5.36□□□□□ -1.55
HOXA3O43365 AL132875.1-201ENST00000403623 949 ntBASIC5.36□□□□□ -1.55
HOXA3O43365 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA3O43365 RNU6ATAC25P-201ENST00000408798 117 ntBASIC5.36□□□□□ -1.55
HOXA3O43365 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
HOXA3O43365 TPT1P2-201ENST00000413105 503 ntBASIC5.36□□□□□ -1.55
HOXA3O43365 PTP4A1P1-201ENST00000420539 515 ntBASIC5.36□□□□□ -1.55
HOXA3O43365 AC239367.3-201ENST00000428996 814 ntBASIC5.36□□□□□ -1.55
HOXA3O43365 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms