Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RPL23AP19-201ENST00000436229 369 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 AC084754.1-201ENST00000463466 464 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 RN7SL443P-201ENST00000464331 290 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 RPL7P6-201ENST00000480903 738 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 PFN1P8-201ENST00000497012 543 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 RPS4XP20-201ENST00000505751 772 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 RNA5SP249-201ENST00000516127 99 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 SUGT1P3-202ENST00000604259 383 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 RN7SL787P-201ENST00000613000 284 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 CYP4F35P-202ENST00000636121 390 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC42Q96M95 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
CCDC42Q96M95 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC42Q96M95 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC005522.1-201ENST00000395416 346 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 CXADRP1-201ENST00000398098 1095 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 AL391422.1-201ENST00000402155 436 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 MIR1182-201ENST00000408363 97 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 EI24P4-201ENST00000423683 1078 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC093655.2-201ENST00000425735 631 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 CYCSP6-201ENST00000434498 302 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 AL136455.1-201ENST00000441083 1240 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 GTF2F2P1-201ENST00000511083 675 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC027308.1-201ENST00000517993 110 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 EIF4A2P5-201ENST00000529914 499 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 AL512310.9-201ENST00000553311 948 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC116553.2-201ENST00000564203 463 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 AC005726.4-201ENST00000582858 458 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 CXADRP3-202ENST00000617265 1100 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 MTND5P12-201ENST00000502851 1449 ntBASIC5.46□□□□□ -1.54
CCDC42Q96M95 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC42Q96M95 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC42Q96M95 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC42Q96M95 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC42Q96M95 AC021242.1-201ENST00000507315 2035 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 SAMMSON-213ENST00000641336 1521 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC42Q96M95 NUDT19P3-201ENST00000404698 555 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 CYCSP12-201ENST00000437729 300 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 TXNP5-201ENST00000441043 315 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 AC073109.1-201ENST00000445066 978 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 SEPT7P3-201ENST00000455017 621 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 Z92846.1-201ENST00000456203 268 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 TPT1P1-201ENST00000458495 518 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 RNA5SP103-201ENST00000459503 118 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 OR10D4P-201ENST00000525892 951 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 AC027544.3-201ENST00000535082 757 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 AC126177.5-201ENST00000549599 178 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 AP005432.2-201ENST00000608162 586 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC42Q96M95 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC42Q96M95 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 ZNF652P1-201ENST00000442420 1309 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 AC235565.1-201ENST00000456962 1325 ntBASIC5.45□□□□□ -1.54
CCDC42Q96M95 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC42Q96M95 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC42Q96M95 AC099654.3-201ENST00000447087 1546 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms