Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 MIR122-201ENST00000385044 85 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 RNU6-796P-201ENST00000391086 107 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AL158825.1-201ENST00000414735 521 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 EEF1B2P5-201ENST00000444820 548 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 VDAC2P4-201ENST00000452925 711 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 CALM1P2-201ENST00000452941 448 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AC008379.1-201ENST00000463655 464 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 RN7SL826P-201ENST00000479724 288 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AC087888.1-201ENST00000550884 1254 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AL049779.2-201ENST00000553847 315 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AC104229.1-201ENST00000561364 255 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AC007346.2-201ENST00000564816 892 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AC034229.4-201ENST00000607861 441 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 SAMMSON-209ENST00000641222 1100 ntBASIC5.71□□□□□ -1.5
HMGB4Q8WW32 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGB4Q8WW32 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 MTND5P11-201ENST00000511037 1812 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RNA5SP514-201ENST00000363717 111 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RNU6-1263P-201ENST00000384601 106 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC005042.1-201ENST00000393397 800 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RNU2-17P-201ENST00000410290 190 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 TMA16P2-201ENST00000413187 601 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC015977.1-201ENST00000418887 292 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 SLC35E1P1-201ENST00000419313 864 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC013262.1-201ENST00000426710 252 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC011242.1-201ENST00000433596 1158 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC006335.2-201ENST00000437993 330 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 CNOT7P2-201ENST00000441051 832 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RPL7P45-201ENST00000455851 743 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RPS23P2-201ENST00000463671 415 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC105384.2-201ENST00000508433 640 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 HSPE1P2-201ENST00000554777 306 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AGGF1P9-201ENST00000561884 913 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC096947.1-201ENST00000603233 470 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RPAP2P1-201ENST00000603626 1168 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC021851.1-201ENST00000608537 1082 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC090912.3-201ENST00000609775 533 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AL136295.6-201ENST00000610486 658 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC093875.1-201ENST00000623688 504 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC010608.3-201ENST00000625048 527 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AP003485.1-201ENST00000625093 753 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 CDC27P2-201ENST00000425026 1922 ntBASIC5.7□□□□□ -1.5
HMGB4Q8WW32 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGB4Q8WW32 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms