Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 RNA5SP453-201ENST00000362503 119 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 RNU4-7P-201ENST00000364758 141 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 RNA5SP211-201ENST00000365516 117 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 SNORD65-201ENST00000391079 73 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 RPL11P3-201ENST00000395256 523 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC093084.1-201ENST00000424233 687 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 RPS6P14-201ENST00000425165 719 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 CCNB1IP1P1-201ENST00000428976 839 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 RPS26P4-201ENST00000431743 355 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL590004.3-202ENST00000445883 451 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL589765.3-201ENST00000446084 462 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 ACA64.4-201ENST00000459070 127 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 SIAH1P1-201ENST00000479411 923 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 HMGB1P3-201ENST00000502802 616 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC010468.3-201ENST00000508225 458 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC016550.3-201ENST00000515706 767 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 RNA5SP206-201ENST00000516703 121 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC078899.1-201ENST00000521432 1185 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 OR4A46P-201ENST00000527255 933 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC079395.2-201ENST00000610982 737 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC096861.1-201ENST00000616652 240 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL691477.1-201ENST00000624398 162 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 OR13C1P-202ENST00000641378 2919 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL121950.1-201ENST00000624993 2077 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AP005435.3-201ENST00000531260 3198 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AC092451.3-201ENST00000625067 1343 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 SNORD51.1-201ENST00000365405 77 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 TPT1-204ENST00000379060 764 ntTSL 5 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 VDAC2P1-201ENST00000399358 958 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 RN7SKP125-201ENST00000410481 302 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AL035660.1-201ENST00000422041 222 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AL121882.1-201ENST00000422893 417 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 UBE2V1P6-201ENST00000430840 422 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 RPL12P3-201ENST00000440080 396 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AC007000.2-201ENST00000442564 487 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AC245517.2-201ENST00000442890 346 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AL627224.1-201ENST00000448334 444 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AL603882.1-201ENST00000463059 681 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 RPL34P33-201ENST00000486062 334 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 RN7SL466P-201ENST00000497546 295 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AC093763.2-201ENST00000505334 1223 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 GLUD1P3-202ENST00000508551 200 ntBASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC4.8□□□□□ -1.64
PDLIM3Q53GG5 RNU6-1102P-201ENST00000516149 96 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms