Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HMGN1P36-201ENST00000446623 298 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC099563.1-201ENST00000456086 418 ntBASIC6.93□□□□□ -1.3
MSX1P28360 CHIAP1-201ENST00000456220 995 ntBASIC6.93□□□□□ -1.3
MSX1P28360 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 AC095059.2-201ENST00000510601 933 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC6.93□□□□□ -1.3
MSX1P28360 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 AC093249.1-201ENST00000567049 203 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 SNX29P2-204ENST00000603801 875 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AL451085.1-201ENST00000604546 690 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 MIR7162-201ENST00000611134 69 ntBASIC6.93□□□□□ -1.3
MSX1P28360 uc_338.5-201ENST00000611839 155 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 AC068722.2-201ENST00000618734 544 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC090971.5-201ENST00000621102 293 ntBASIC6.93□□□□□ -1.3
MSX1P28360 7SK.10-201ENST00000621414 298 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC005618.4-201ENST00000625053 554 ntBASIC6.93□□□□□ -1.3
MSX1P28360 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 ZNF733P-202ENST00000444809 1573 ntBASIC6.93□□□□□ -1.3
MSX1P28360 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 KRT73-AS1-203ENST00000552364 3808 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 HEPACAM2-202ENST00000394468 2148 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
MSX1P28360 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.92□□□□□ -1.3
MSX1P28360 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC6.92□□□□□ -1.3
MSX1P28360 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 PRIM2-207ENST00000615550 2308 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 OR51M1-201ENST00000328611 1058 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
MSX1P28360 Y_RNA.315-201ENST00000365117 102 ntBASIC6.92□□□□□ -1.3
MSX1P28360 SNORA4.3-201ENST00000365564 137 ntBASIC6.92□□□□□ -1.3
MSX1P28360 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 FABP9-201ENST00000379071 497 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
MSX1P28360 SNORA51.7-201ENST00000384171 134 ntBASIC6.92□□□□□ -1.3
MSX1P28360 MIR559-201ENST00000385188 96 ntBASIC6.92□□□□□ -1.3
MSX1P28360 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
MSX1P28360 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.92□□□□□ -1.3
MSX1P28360 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.92□□□□□ -1.3
MSX1P28360 MTCO2P5-201ENST00000422621 426 ntBASIC6.92□□□□□ -1.3
MSX1P28360 FDPSP6-201ENST00000425091 512 ntBASIC6.92□□□□□ -1.3
MSX1P28360 NPM1P34-201ENST00000428821 893 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AC236972.2-201ENST00000434979 310 ntBASIC6.92□□□□□ -1.3
MSX1P28360 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 AC093157.1-202ENST00000446527 1045 ntTSL 3 BASIC6.92□□□□□ -1.3
MSX1P28360 RPL7P12-201ENST00000446719 750 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC6.92□□□□□ -1.3
MSX1P28360 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC6.92□□□□□ -1.3
MSX1P28360 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC6.92□□□□□ -1.3
MSX1P28360 AC097263.1-201ENST00000496795 606 ntBASIC6.92□□□□□ -1.3
MSX1P28360 RNU7-30P-201ENST00000516835 62 ntBASIC6.92□□□□□ -1.3
MSX1P28360 IGHVII-49-1-201ENST00000521760 224 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AC013828.2-201ENST00000532487 235 ntBASIC6.92□□□□□ -1.3
MSX1P28360 MAL2-203ENST00000534619 578 ntTSL 4 BASIC6.92□□□□□ -1.3
MSX1P28360 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC6.92□□□□□ -1.3
MSX1P28360 AL121594.2-201ENST00000541658 472 ntBASIC6.92□□□□□ -1.3
MSX1P28360 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 CYCSP2-201ENST00000558168 301 ntBASIC6.92□□□□□ -1.3
MSX1P28360 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC6.92□□□□□ -1.3
MSX1P28360 AC060809.1-201ENST00000559211 564 ntTSL 4 BASIC6.92□□□□□ -1.3
MSX1P28360 FRG2IP-201ENST00000563581 781 ntBASIC6.92□□□□□ -1.3
MSX1P28360 DNM1P31-201ENST00000564149 696 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.92□□□□□ -1.3
MSX1P28360 MIR4307-201ENST00000582802 84 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AC008737.2-201ENST00000599446 118 ntBASIC6.92□□□□□ -1.3
MSX1P28360 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.92□□□□□ -1.3
MSX1P28360 PTCHD3P1-201ENST00000612350 537 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 MIR6774-201ENST00000614651 70 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AL132822.1-201ENST00000617063 513 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AC027506.1-201ENST00000621395 198 ntBASIC6.92□□□□□ -1.3
MSX1P28360 AL078596.1-201ENST00000624856 447 ntBASIC6.92□□□□□ -1.3
MSX1P28360 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
MSX1P28360 MTHFD1P1-201ENST00000413059 2764 ntBASIC6.92□□□□□ -1.3
MSX1P28360 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms