Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL6A3P12111 AL139095.1-201ENST00000404326 391 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.04□□□□□ -1.6
COL6A3P12111 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC5.04□□□□□ -1.6
COL6A3P12111 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.04□□□□□ -1.6
COL6A3P12111 MIR4513-201ENST00000581077 86 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 MIR6875-201ENST00000617506 72 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 RNU1-130P-201ENST00000363930 160 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 AL161722.2-201ENST00000434731 981 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 HMGB1P4-201ENST00000455362 567 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 AC009948.5-201ENST00000624360 4406 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 AL590004.4-201ENST00000566733 7060 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.04□□□□□ -1.6
COL6A3P12111 ZNF833P-201ENST00000424938 1494 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 AL122016.1-201ENST00000403365 367 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.04□□□□□ -1.6
COL6A3P12111 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.04□□□□□ -1.6
COL6A3P12111 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 AC012409.3-201ENST00000611343 981 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A3P12111 AC092451.3-201ENST00000625067 1343 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 ST8SIA3-201ENST00000324000 11833 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC5.03□□□□□ -1.6
COL6A3P12111 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A3P12111 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 AC007068.1-201ENST00000396690 844 ntBASIC5.03□□□□□ -1.6
COL6A3P12111 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A3P12111 AC108463.1-201ENST00000450258 347 ntBASIC5.03□□□□□ -1.6
COL6A3P12111 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A3P12111 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A3P12111 GLUD1P3-202ENST00000508551 200 ntBASIC5.03□□□□□ -1.6
COL6A3P12111 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A3P12111 AC010653.1-201ENST00000571108 881 ntBASIC5.03□□□□□ -1.6
COL6A3P12111 MIR6867-201ENST00000610636 67 ntBASIC5.03□□□□□ -1.6
COL6A3P12111 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A3P12111 ZEB2-239ENST00000637045 9091 ntTSL 5 BASIC5.03□□□□□ -1.6
COL6A3P12111 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL6A3P12111 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A3P12111 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 RBM7-204ENST00000541475 6725 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A3P12111 SPATA31D3-201ENST00000445385 4785 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A3P12111 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.03□□□□□ -1.6
COL6A3P12111 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.03□□□□□ -1.6
COL6A3P12111 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A3P12111 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC5.03□□□□□ -1.6
COL6A3P12111 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A3P12111 RAD54L2-201ENST00000409535 9776 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
COL6A3P12111 AC004817.4-201ENST00000602396 3625 ntBASIC5.03□□□□□ -1.6
COL6A3P12111 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A3P12111 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.61
COL6A3P12111 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 AC007114.2-201ENST00000576014 4281 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 MIR383-201ENST00000362257 73 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 AL161909.1-201ENST00000397390 712 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 RNGTTP1-201ENST00000420965 728 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 AC146944.2-203ENST00000502493 354 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 AC139495.1-202ENST00000513164 354 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 AC090136.1-201ENST00000520009 240 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.02□□□□□ -1.61
COL6A3P12111 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms