Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 AC092692.1-201ENST00000623625 2595 ntBASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 GDA-209ENST00000545168 5362 ntTSL 2 BASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 RNF19BPY-201ENST00000458209 1550 ntBASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
CCDC39Q9UFE4 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 RNU1-84P-201ENST00000365447 164 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AL096800.1-201ENST00000405326 893 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 RN7SKP281-201ENST00000410472 352 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 XIST-201ENST00000416330 750 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC083862.1-201ENST00000427378 1242 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 CNOT7P2-201ENST00000441051 832 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 GAPDHP37-201ENST00000442317 968 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 SNRPEP8-201ENST00000442866 260 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 WDR82P2-201ENST00000444540 928 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 RPL6P9-201ENST00000466502 859 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC022730.1-201ENST00000473114 568 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 SYPL1P1-201ENST00000473622 768 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 RN7SL502P-201ENST00000481857 290 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AL035690.1-201ENST00000490892 383 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC109471.1-201ENST00000511631 612 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 RNU6-491P-201ENST00000516099 110 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 RN7SKP5-201ENST00000517045 272 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 RNU6-232P-201ENST00000517144 64 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 COX6B1P4-201ENST00000519826 484 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC006566.1-201ENST00000608943 513 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC016769.4-201ENST00000616893 535 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC068213.1-201ENST00000625124 226 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 AC006600.2-201ENST00000624834 2506 ntBASIC7.21□□□□□ -1.26
CCDC39Q9UFE4 GUCY1B2-204ENST00000531898 1979 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 SNORD35A-201ENST00000363389 86 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 TINAG-202ENST00000370864 692 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 RNU6-207P-201ENST00000384137 107 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 RNU6-1011P-201ENST00000384668 107 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 Y_RNA.553-201ENST00000384670 102 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 SNORD94-201ENST00000386037 137 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 UBE2V1P14-201ENST00000415815 558 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 RPS3AP37-201ENST00000419176 745 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 MRPS21P2-201ENST00000424704 264 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC016027.5-201ENST00000427227 210 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC009263.1-201ENST00000441193 1239 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC092691.2-201ENST00000461787 803 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 RPS4XP17-201ENST00000479057 754 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 OR2A3P-201ENST00000493774 953 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms