Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC099786.3-201ENST00000565735 1410 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AL355377.1-201ENST00000621125 1653 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 U6.112-201ENST00000384129 70 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RNY3P9-201ENST00000384727 106 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 CHMP1B2P-201ENST00000399581 597 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC010385.1-201ENST00000412374 256 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC023128.2-201ENST00000420880 1223 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AL663074.2-201ENST00000440621 479 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 CR769776.1-201ENST00000441254 787 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC015983.1-201ENST00000441577 373 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 EEF1B2P6-201ENST00000445713 673 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RPS20P4-201ENST00000461659 355 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RPS23P6-201ENST00000466136 431 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RPS26P39-201ENST00000469206 341 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RN7SL629P-201ENST00000489622 285 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RNU6-615P-201ENST00000516065 106 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RNU6-1028P-201ENST00000517164 93 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 HMGB1P42-201ENST00000532126 553 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 AC004836.1-201ENST00000623032 634 ntBASIC6.07□□□□□ -1.44
TDP1Q9NUW8 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
TDP1Q9NUW8 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 SPATA2P1-201ENST00000431223 2055 ntBASIC6.06□□□□□ -1.44
TDP1Q9NUW8 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 MTCO1P15-201ENST00000529569 1526 ntBASIC6.06□□□□□ -1.44
TDP1Q9NUW8 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 RN7SKP160-201ENST00000363804 340 ntBASIC6.06□□□□□ -1.44
TDP1Q9NUW8 RNA5SP132-201ENST00000364725 118 ntBASIC6.06□□□□□ -1.44
TDP1Q9NUW8 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 MIR513B-201ENST00000385136 84 ntBASIC6.06□□□□□ -1.44
TDP1Q9NUW8 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 SNORA11B-201ENST00000408175 129 ntBASIC6.06□□□□□ -1.44
TDP1Q9NUW8 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC6.06□□□□□ -1.44
TDP1Q9NUW8 HMGA1P8-201ENST00000414130 321 ntBASIC6.06□□□□□ -1.44
TDP1Q9NUW8 AC017078.1-201ENST00000416146 368 ntBASIC6.06□□□□□ -1.44
TDP1Q9NUW8 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms