Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC007996.1-201ENST00000620414 2821 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC42Q96M95 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 RNA5SP510-201ENST00000364697 99 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 RN7SKP124-201ENST00000364730 341 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 SNORA2.3-201ENST00000383920 135 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 RNU1-77P-201ENST00000390868 162 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 RNA5SP339-201ENST00000390987 122 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 AC013442.1-201ENST00000397347 228 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 KCTD9P1-201ENST00000430462 1167 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 FAM96AP1-201ENST00000430879 482 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 AL356981.1-201ENST00000454879 684 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 GYG1P1-201ENST00000460864 698 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 RN7SL441P-201ENST00000492388 296 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 RPEP1-201ENST00000504507 658 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 RNA5SP303-201ENST00000516192 130 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 RNU6-941P-201ENST00000516346 108 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 RPL23AP53-201ENST00000521854 457 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 AC005363.1-201ENST00000530779 351 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC42Q96M95 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 AC107958.1-201ENST00000556576 290 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 AC135626.1-201ENST00000556983 435 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC42Q96M95 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 RNF19BPY-201ENST00000458209 1550 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC42Q96M95 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC42Q96M95 AP000542.2-201ENST00000623199 6179 ntBASIC5.49□□□□□ -1.53
CCDC42Q96M95 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 SOCS5P3-201ENST00000425115 1576 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC42Q96M95 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC42Q96M95 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 IPPKP1-201ENST00000422501 768 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC42Q96M95 RPS4XP16-201ENST00000427198 791 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 HMGN1P36-201ENST00000446623 298 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 YWHAEP1-201ENST00000453697 763 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 NDUFA5P5-201ENST00000468361 342 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 AC094085.1-201ENST00000468914 584 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 SIAH1P1-201ENST00000479411 923 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 GOLGA5P1-201ENST00000507317 980 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.48□□□□□ -1.53
CCDC42Q96M95 SAMMSON-209ENST00000641222 1100 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC42Q96M95 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC42Q96M95 AC116158.1-201ENST00000560231 2129 ntBASIC5.48□□□□□ -1.53
CCDC42Q96M95 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC42Q96M95 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 RN7SKP113-201ENST00000363891 295 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC42Q96M95 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 AC002524.1-201ENST00000411687 547 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 AL390774.1-201ENST00000411924 246 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 AL445213.1-201ENST00000412589 747 ntBASIC5.47□□□□□ -1.53
CCDC42Q96M95 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC42Q96M95 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms