Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
VMP1Q96GC9 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
VMP1Q96GC9 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VMP1Q96GC9 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VMP1Q96GC9 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VMP1Q96GC9 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VMP1Q96GC9 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
VMP1Q96GC9 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VMP1Q96GC9 RNU6-31P-201ENST00000384388 108 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 OR7E101P-201ENST00000400428 513 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 RN7SKP279-201ENST00000411383 298 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC245060.4-201ENST00000413293 1121 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC048351.1-201ENST00000420064 602 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 NAP1L4P2-201ENST00000425958 899 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 MRPS33P4-201ENST00000434892 317 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC023141.8-201ENST00000442554 208 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC245517.2-201ENST00000442890 346 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC092106.1-201ENST00000444291 373 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC023424.1-201ENST00000496058 459 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 SNORA70.20-201ENST00000516848 126 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 HIGD1AP18-201ENST00000520730 278 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC084824.2-201ENST00000548906 345 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC020763.5-201ENST00000623298 430 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC130304.1-201ENST00000622942 2385 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC007382.1-201ENST00000624376 2618 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 AC090017.1-201ENST00000548612 1779 ntBASIC5.46□□□□□ -1.54
VMP1Q96GC9 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VMP1Q96GC9 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VMP1Q96GC9 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.46□□□□□ -1.54
VMP1Q96GC9 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 RNA5SP500-201ENST00000364486 119 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC019155.1-201ENST00000382242 574 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 RNA5SP284-201ENST00000384547 118 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 GPS2P1-201ENST00000411761 986 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 AL389925.1-201ENST00000432257 728 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 RPL23AP19-201ENST00000436229 369 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 RPS23P9-201ENST00000448848 438 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 EIF4A1P11-201ENST00000451239 222 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 AL445665.1-202ENST00000452436 324 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 RNU1-88P-201ENST00000459274 128 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC007998.1-201ENST00000474156 672 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 OR7E157P-201ENST00000494376 911 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC108120.2-201ENST00000512973 294 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 SNORD46.2-201ENST00000516021 102 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 RNU6-1308P-201ENST00000516817 103 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC091078.2-201ENST00000557145 559 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC007346.2-201ENST00000564816 892 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 MIR4260-201ENST00000583107 67 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC008521.2-201ENST00000591021 259 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AL008729.2-201ENST00000606393 473 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AL355974.3-201ENST00000617383 467 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 LINC00216-201ENST00000623548 1126 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC106872.5-201ENST00000508856 1416 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms