Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC124945.1-201ENST00000485133 188 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AC109927.2-201ENST00000506416 303 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC6.15□□□□□ -1.42
USP39Q53GS9 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC6.15□□□□□ -1.42
USP39Q53GS9 CYCSP22-201ENST00000517555 339 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.15□□□□□ -1.42
USP39Q53GS9 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.15□□□□□ -1.42
USP39Q53GS9 IGLV2-28-201ENST00000520681 304 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
USP39Q53GS9 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC6.15□□□□□ -1.42
USP39Q53GS9 GNG2-208ENST00000554875 430 ntTSL 5 BASIC6.15□□□□□ -1.42
USP39Q53GS9 AL391156.1-201ENST00000554965 554 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.15□□□□□ -1.42
USP39Q53GS9 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.15□□□□□ -1.42
USP39Q53GS9 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.15□□□□□ -1.42
USP39Q53GS9 AC018558.5-201ENST00000565840 952 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.15□□□□□ -1.42
USP39Q53GS9 MIR4776-2-201ENST00000580204 80 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 CCDC58P3-201ENST00000590792 430 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 MRPS35P3-201ENST00000603189 709 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AC064872.1-201ENST00000604823 1072 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AL136131.3-201ENST00000607600 188 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 RNU6-84P-201ENST00000607737 102 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AC245297.2-201ENST00000610119 565 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AC123767.1-202ENST00000620407 817 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.15□□□□□ -1.42
USP39Q53GS9 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC6.15□□□□□ -1.42
USP39Q53GS9 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
USP39Q53GS9 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
USP39Q53GS9 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
USP39Q53GS9 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
USP39Q53GS9 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
USP39Q53GS9 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.15□□□□□ -1.43
USP39Q53GS9 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
USP39Q53GS9 DDX18P6-201ENST00000450119 1997 ntBASIC6.15□□□□□ -1.43
USP39Q53GS9 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
USP39Q53GS9 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 HSPD1P8-201ENST00000400121 1658 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
USP39Q53GS9 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.14□□□□□ -1.43
USP39Q53GS9 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.14□□□□□ -1.43
USP39Q53GS9 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AL662795.2-201ENST00000624252 3706 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.14□□□□□ -1.43
USP39Q53GS9 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
USP39Q53GS9 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 AL355615.1-201ENST00000406187 641 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 AL365396.1-201ENST00000430854 671 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 AC046176.1-201ENST00000435260 1170 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC016772.1-201ENST00000444170 1261 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 HSFY3P-201ENST00000444242 1191 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.14□□□□□ -1.43
USP39Q53GS9 BMI1P1-201ENST00000445879 941 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC6.14□□□□□ -1.43
USP39Q53GS9 OFD1P7Y-201ENST00000454643 1155 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC105420.1-201ENST00000504389 582 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC117532.1-201ENST00000514638 323 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 PCNAP4-201ENST00000532690 730 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AP000919.1-202ENST00000581139 1264 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 EIF1P5-201ENST00000585002 234 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC095055.1-201ENST00000603472 1113 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 AP002360.4-201ENST00000606980 481 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC073534.2-201ENST00000620377 381 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC005261.4-201ENST00000600047 1385 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.14□□□□□ -1.43
USP39Q53GS9 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.14□□□□□ -1.43
USP39Q53GS9 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.14□□□□□ -1.43
USP39Q53GS9 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 AL355377.1-201ENST00000621125 1653 ntBASIC6.14□□□□□ -1.43
USP39Q53GS9 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP39Q53GS9 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms