Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AC063976.2-201ENST00000425667 3556 ntBASIC4.85□□□□□ -1.63
RFX4Q33E94 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.85□□□□□ -1.63
RFX4Q33E94 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
RFX4Q33E94 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 RN7SKP292-201ENST00000365522 317 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
RFX4Q33E94 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.84□□□□□ -1.63
RFX4Q33E94 HMGN1P20-201ENST00000411849 300 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 AC234781.4-201ENST00000419384 244 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 SETP10-201ENST00000424368 814 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 FGF12-202ENST00000430714 603 ntTSL 2 BASIC4.84□□□□□ -1.63
RFX4Q33E94 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.84□□□□□ -1.63
RFX4Q33E94 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.84□□□□□ -1.63
RFX4Q33E94 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.84□□□□□ -1.63
RFX4Q33E94 HMGN1P2-201ENST00000445197 310 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.84□□□□□ -1.63
RFX4Q33E94 AC112206.1-201ENST00000468416 477 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 BTG4P1-201ENST00000510421 183 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 AC027308.1-201ENST00000517993 110 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 AGGF1P9-201ENST00000561884 913 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 AC005252.1-201ENST00000604518 1063 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 AC097505.1-201ENST00000610199 565 ntBASIC4.84□□□□□ -1.63
RFX4Q33E94 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
RFX4Q33E94 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.84□□□□□ -1.63
RFX4Q33E94 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.84□□□□□ -1.64
RFX4Q33E94 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.83□□□□□ -1.64
RFX4Q33E94 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 LYPLA1P3-201ENST00000402650 695 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AL390316.1-201ENST00000406279 553 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 RNU2-22P-201ENST00000411266 212 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 OR2AT2P-201ENST00000413438 905 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.83□□□□□ -1.64
RFX4Q33E94 EIF4A1P1-201ENST00000420241 934 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AC093155.2-201ENST00000420734 937 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC4.83□□□□□ -1.64
RFX4Q33E94 RPL34P3-201ENST00000421454 338 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.83□□□□□ -1.64
RFX4Q33E94 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC019185.1-201ENST00000442718 389 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AC090686.1-201ENST00000481577 749 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC112184.1-201ENST00000505179 312 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC109481.1-201ENST00000509173 282 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC006427.1-201ENST00000514359 712 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.83□□□□□ -1.64
RFX4Q33E94 EIF4A2P5-201ENST00000529914 499 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AP004607.2-201ENST00000533949 322 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 NANOGNBP2-201ENST00000544753 553 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AL049872.1-201ENST00000556323 322 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC4.83□□□□□ -1.64
RFX4Q33E94 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 AC015660.5-201ENST00000623238 564 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 AC007683.2-201ENST00000624681 714 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.83□□□□□ -1.64
RFX4Q33E94 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX4Q33E94 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RFX4Q33E94 OR13C1P-202ENST00000641378 2919 ntBASIC4.83□□□□□ -1.64
RFX4Q33E94 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX4Q33E94 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX4Q33E94 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RFX4Q33E94 AC107068.1-201ENST00000563286 4218 ntBASIC4.82□□□□□ -1.64
RFX4Q33E94 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX4Q33E94 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX4Q33E94 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
RFX4Q33E94 RNA5SP46-201ENST00000362370 120 ntBASIC4.82□□□□□ -1.64
RFX4Q33E94 RNU1-74P-201ENST00000384108 171 ntBASIC4.82□□□□□ -1.64
RFX4Q33E94 SNORA16A-201ENST00000384342 137 ntBASIC4.82□□□□□ -1.64
RFX4Q33E94 AL035079.1-201ENST00000405210 287 ntBASIC4.82□□□□□ -1.64
RFX4Q33E94 RNA5SP487-201ENST00000410186 122 ntBASIC4.82□□□□□ -1.64
RFX4Q33E94 SLC20A1P1-201ENST00000413906 956 ntBASIC4.82□□□□□ -1.64
RFX4Q33E94 EEF1B2P8-201ENST00000414101 671 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms