Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.88□□□□□ -1.63
FOXA1P55317 AC004980.3-201ENST00000447046 365 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC4.88□□□□□ -1.63
FOXA1P55317 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.88□□□□□ -1.63
FOXA1P55317 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.88□□□□□ -1.63
FOXA1P55317 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.88□□□□□ -1.63
FOXA1P55317 UBA52P7-201ENST00000486088 380 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 AC069304.1-201ENST00000491593 704 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 AC023424.1-201ENST00000496058 459 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.88□□□□□ -1.63
FOXA1P55317 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.88□□□□□ -1.63
FOXA1P55317 HMGB3P16-201ENST00000508037 287 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 AC090568.1-201ENST00000509499 856 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.88□□□□□ -1.63
FOXA1P55317 AC012339.2-201ENST00000523996 453 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.88□□□□□ -1.63
FOXA1P55317 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.88□□□□□ -1.63
FOXA1P55317 FKBP1AP1-201ENST00000594588 318 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.88□□□□□ -1.63
FOXA1P55317 AL357153.4-201ENST00000620487 1016 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 AL512356.3-201ENST00000623005 461 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 AP001962.1-201ENST00000624114 559 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 SNORA17.5-201ENST00000630429 132 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.88□□□□□ -1.63
FOXA1P55317 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
FOXA1P55317 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
FOXA1P55317 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
FOXA1P55317 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
FOXA1P55317 STX3-208ENST00000641815 3236 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 AC010266.2-201ENST00000564741 3255 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
FOXA1P55317 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
FOXA1P55317 RN7SKP113-201ENST00000363891 295 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 AL353625.1-202ENST00000366273 571 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
FOXA1P55317 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.87□□□□□ -1.63
FOXA1P55317 QRSL1P2-201ENST00000418582 964 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.87□□□□□ -1.63
FOXA1P55317 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.87□□□□□ -1.63
FOXA1P55317 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.87□□□□□ -1.63
FOXA1P55317 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.87□□□□□ -1.63
FOXA1P55317 HMGB1P4-201ENST00000455362 567 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 AC024940.3-201ENST00000538551 316 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.87□□□□□ -1.63
FOXA1P55317 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.87□□□□□ -1.63
FOXA1P55317 AC079395.2-201ENST00000610982 737 ntBASIC4.87□□□□□ -1.63
FOXA1P55317 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.87□□□□□ -1.63
FOXA1P55317 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.87□□□□□ -1.63
FOXA1P55317 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
FOXA1P55317 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.87□□□□□ -1.63
FOXA1P55317 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
FOXA1P55317 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
FOXA1P55317 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
FOXA1P55317 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.86□□□□□ -1.63
FOXA1P55317 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
FOXA1P55317 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
FOXA1P55317 RNU1-43P-201ENST00000365052 165 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
FOXA1P55317 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
FOXA1P55317 RN7SKP114-201ENST00000410327 279 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 NPM1P40-201ENST00000412758 733 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.86□□□□□ -1.63
FOXA1P55317 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.86□□□□□ -1.63
FOXA1P55317 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.86□□□□□ -1.63
FOXA1P55317 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.86□□□□□ -1.63
FOXA1P55317 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC4.86□□□□□ -1.63
FOXA1P55317 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.86□□□□□ -1.63
FOXA1P55317 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.86□□□□□ -1.63
FOXA1P55317 RPS29P9-201ENST00000440360 171 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 AC073052.1-201ENST00000440417 714 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.86□□□□□ -1.63
FOXA1P55317 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.86□□□□□ -1.63
FOXA1P55317 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.86□□□□□ -1.63
FOXA1P55317 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
FOXA1P55317 AC011225.1-201ENST00000457751 369 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 AC108693.1-201ENST00000496068 432 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.86□□□□□ -1.63
FOXA1P55317 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.86□□□□□ -1.63
FOXA1P55317 ENPP7P9-201ENST00000514456 627 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 RNA5SP303-201ENST00000516192 130 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 AC027308.1-201ENST00000517993 110 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.86□□□□□ -1.63
FOXA1P55317 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.86□□□□□ -1.63
FOXA1P55317 MIR4472-2-201ENST00000582069 67 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC4.86□□□□□ -1.63
FOXA1P55317 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms