Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC108673.3-201ENST00000609183 335 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 AC011472.4-201ENST00000615848 491 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AC245389.2-201ENST00000616023 576 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AC242843.1-201ENST00000618702 573 ntBASIC4.7□□□□□ -1.66
CDX1P47902 SNORA11.6-201ENST00000619030 128 ntBASIC4.7□□□□□ -1.66
CDX1P47902 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 FRG1EP-201ENST00000634469 770 ntBASIC4.7□□□□□ -1.66
CDX1P47902 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
CDX1P47902 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 AC012254.3-201ENST00000591183 2117 ntBASIC4.7□□□□□ -1.66
CDX1P47902 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CDX1P47902 AP001642.1-201ENST00000624727 2117 ntBASIC4.69□□□□□ -1.66
CDX1P47902 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
CDX1P47902 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC4.69□□□□□ -1.66
CDX1P47902 AC021242.1-201ENST00000507315 2035 ntBASIC4.69□□□□□ -1.66
CDX1P47902 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
CDX1P47902 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
CDX1P47902 OR6K3-202ENST00000368146 996 ntBASIC4.69□□□□□ -1.66
CDX1P47902 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 SNORA70.6-201ENST00000383934 134 ntBASIC4.69□□□□□ -1.66
CDX1P47902 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 HMGB1P10-201ENST00000395823 563 ntBASIC4.69□□□□□ -1.66
CDX1P47902 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 SLC20A1P1-201ENST00000413906 956 ntBASIC4.69□□□□□ -1.66
CDX1P47902 MARK2P12-201ENST00000420129 585 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC4.69□□□□□ -1.66
CDX1P47902 VN1R110P-201ENST00000438988 971 ntBASIC4.69□□□□□ -1.66
CDX1P47902 RPL34P26-201ENST00000445636 354 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 CST12P-201ENST00000457644 362 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AC023245.1-201ENST00000468501 517 ntBASIC4.69□□□□□ -1.66
CDX1P47902 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 NPM1P17-201ENST00000479221 602 ntBASIC4.69□□□□□ -1.66
CDX1P47902 RPL23AP40-201ENST00000487630 390 ntBASIC4.69□□□□□ -1.66
CDX1P47902 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.69□□□□□ -1.66
CDX1P47902 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 AC011411.1-201ENST00000509592 876 ntBASIC4.69□□□□□ -1.66
CDX1P47902 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 OR5H7P-201ENST00000514084 930 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 RNU6-1004P-201ENST00000516584 111 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 WBP1LP3-201ENST00000523033 208 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 OR4A17P-201ENST00000526032 904 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC4.69□□□□□ -1.66
CDX1P47902 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC4.69□□□□□ -1.66
CDX1P47902 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 AC022884.3-201ENST00000579571 248 ntBASIC4.69□□□□□ -1.66
CDX1P47902 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC4.69□□□□□ -1.66
CDX1P47902 ADAD1P2-201ENST00000588476 646 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AC020916.2-201ENST00000591242 360 ntBASIC4.69□□□□□ -1.66
CDX1P47902 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.69□□□□□ -1.66
CDX1P47902 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.69□□□□□ -1.66
CDX1P47902 AL136228.1-201ENST00000622221 319 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AP001962.1-201ENST00000624114 559 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AL357562.1-201ENST00000624911 609 ntBASIC4.69□□□□□ -1.66
CDX1P47902 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC4.69□□□□□ -1.66
CDX1P47902 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.69□□□□□ -1.66
CDX1P47902 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 SOCS5P3-201ENST00000425115 1576 ntBASIC4.69□□□□□ -1.66
CDX1P47902 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 AC005224.3-201ENST00000584683 2140 ntBASIC4.69□□□□□ -1.66
CDX1P47902 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CDX1P47902 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC4.68□□□□□ -1.66
CDX1P47902 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms