Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
COL6A1P12109 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL6A1P12109 AL592429.1-201ENST00000403909 1473 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.66□□□□□ -1.34
COL6A1P12109 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC6.66□□□□□ -1.34
COL6A1P12109 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COL6A1P12109 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.66□□□□□ -1.34
COL6A1P12109 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.66□□□□□ -1.34
COL6A1P12109 RN7SKP28-201ENST00000364770 305 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 RNU6-468P-201ENST00000384003 109 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 SNORD116-1-201ENST00000384335 95 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 OR6E1P-201ENST00000414424 923 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 CYP4F30P-202ENST00000420048 405 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 USP9YP21-201ENST00000420603 432 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 TNPO1P1-201ENST00000423641 1138 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC6.66□□□□□ -1.34
COL6A1P12109 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC6.66□□□□□ -1.34
COL6A1P12109 THAP5P1-201ENST00000439089 262 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 CNOT7P2-201ENST00000441051 832 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC6.66□□□□□ -1.34
COL6A1P12109 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC6.66□□□□□ -1.34
COL6A1P12109 NAP1L1P3-201ENST00000462291 880 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 BET1P1-201ENST00000482276 359 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 NPM1P27-201ENST00000502784 830 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC109635.6-201ENST00000525487 1113 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC6.66□□□□□ -1.34
COL6A1P12109 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC6.66□□□□□ -1.34
COL6A1P12109 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 IGBP1P1-201ENST00000554337 1009 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AL049872.1-201ENST00000556323 322 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 DHFRP1-201ENST00000579682 559 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.66□□□□□ -1.34
COL6A1P12109 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC6.66□□□□□ -1.34
COL6A1P12109 Z99497.2-201ENST00000603634 310 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AC025588.2-201ENST00000604851 466 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AC087752.4-201ENST00000605911 462 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.66□□□□□ -1.34
COL6A1P12109 RMST_5.1-201ENST00000618704 126 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AL137067.2-201ENST00000621202 131 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 Z98755.1-201ENST00000407015 1384 ntBASIC6.66□□□□□ -1.34
COL6A1P12109 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.66□□□□□ -1.34
COL6A1P12109 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL6A1P12109 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
COL6A1P12109 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.66□□□□□ -1.34
COL6A1P12109 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL6A1P12109 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL6A1P12109 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL6A1P12109 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL6A1P12109 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.65□□□□□ -1.34
COL6A1P12109 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.65□□□□□ -1.34
COL6A1P12109 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
COL6A1P12109 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL6A1P12109 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL6A1P12109 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL6A1P12109 RN7SKP115-201ENST00000363177 317 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 MIR513B-201ENST00000385136 84 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 RNU6-648P-201ENST00000410190 107 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 RN7SKP125-201ENST00000410481 302 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.65□□□□□ -1.34
COL6A1P12109 MTND4P22-201ENST00000413116 1169 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 AL158050.1-201ENST00000416077 457 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC6.65□□□□□ -1.34
COL6A1P12109 ARL2BPP3-201ENST00000421226 480 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC6.65□□□□□ -1.34
COL6A1P12109 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.65□□□□□ -1.34
COL6A1P12109 RPS26P4-201ENST00000431743 355 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 MTCYBP29-201ENST00000436327 1006 ntBASIC6.65□□□□□ -1.34
COL6A1P12109 MTND1P34-201ENST00000438556 671 ntBASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms