Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC078878.1-201ENST00000539832 958 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
HOXD4P09016 HSPE1P2-201ENST00000554777 306 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXD4P09016 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXD4P09016 AC233702.9-201ENST00000581528 203 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXD4P09016 AC024940.4-201ENST00000605507 246 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXD4P09016 AC025574.2-201ENST00000615621 514 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 AL162574.1-201ENST00000615702 950 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 AC107905.1-201ENST00000616204 426 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 AC068870.2-201ENST00000620635 389 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXD4P09016 AC136428.4-201ENST00000634254 1155 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 FRG1EP-201ENST00000634469 770 ntBASIC4.98□□□□□ -1.61
HOXD4P09016 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXD4P09016 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXD4P09016 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXD4P09016 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXD4P09016 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXD4P09016 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
HOXD4P09016 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
HOXD4P09016 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.98□□□□□ -1.61
HOXD4P09016 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
HOXD4P09016 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXD4P09016 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXD4P09016 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXD4P09016 AP001642.1-201ENST00000624727 2117 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 OR55B1P-203ENST00000641518 2602 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXD4P09016 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXD4P09016 AC093909.5-201ENST00000621839 1799 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXD4P09016 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HOXD4P09016 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXD4P09016 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HOXD4P09016 RNA5SP487-201ENST00000410186 122 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 RN7SKP213-201ENST00000410746 298 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 AL133325.1-201ENST00000421090 382 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXD4P09016 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXD4P09016 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXD4P09016 TMEM183AP1-205ENST00000432739 290 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 AL596266.1-201ENST00000448132 400 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 FCF1P7-201ENST00000451185 558 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 AP002371.1-201ENST00000463604 433 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXD4P09016 RPS4XP1-201ENST00000482189 787 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 NPM1P29-201ENST00000483112 803 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.97□□□□□ -1.61
HOXD4P09016 PDCL3P4-201ENST00000489621 720 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 AC072052.1-201ENST00000496556 306 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.97□□□□□ -1.61
HOXD4P09016 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
HOXD4P09016 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXD4P09016 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.97□□□□□ -1.61
HOXD4P09016 AC234775.3-201ENST00000564612 656 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 HIRAP1-201ENST00000605318 787 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 AL118522.2-201ENST00000616045 615 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXD4P09016 AC006213.5-201ENST00000619673 288 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 AP003400.6-201ENST00000624698 740 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXD4P09016 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXD4P09016 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXD4P09016 SMG1P7-201ENST00000565246 2704 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXD4P09016 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXD4P09016 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXD4P09016 AC233968.1-201ENST00000611212 1300 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 AL929601.4-201ENST00000613011 1341 ntBASIC4.97□□□□□ -1.61
HOXD4P09016 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
HOXD4P09016 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HOXD4P09016 PWAR1-201ENST00000624188 2414 ntBASIC4.96□□□□□ -1.61
HOXD4P09016 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
HOXD4P09016 ADAM5-202ENST00000399789 1942 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXD4P09016 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXD4P09016 MIR585-201ENST00000384887 94 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 RN7SKP273-201ENST00000411392 314 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 AC012497.1-201ENST00000429392 575 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 RPL12P17-201ENST00000432393 498 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXD4P09016 NANOGP9-201ENST00000439890 892 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXD4P09016 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXD4P09016 AC104849.1-201ENST00000462623 405 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXD4P09016 PGAM1P13-201ENST00000507497 754 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms