Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC097063.1-201ENST00000426714 1797 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC012078.1-201ENST00000405035 1646 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 TCP1P3-201ENST00000414406 1498 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 IPPKP1-201ENST00000422501 768 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 HSPE1P27-201ENST00000430808 296 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 RPL34P6-201ENST00000432390 345 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC004980.3-201ENST00000447046 365 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC084754.1-201ENST00000463466 464 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC007998.1-201ENST00000474156 672 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC027308.1-201ENST00000517993 110 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC005868.1-201ENST00000536421 331 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 MIR4433B-201ENST00000581329 102 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 MIR8080-201ENST00000622224 89 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 AC015871.5-202ENST00000623252 701 ntBASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
TRIM49D1C9J1S8 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
TRIM49D1C9J1S8 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.6
TRIM49D1C9J1S8 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.09□□□□□ -1.6
TRIM49D1C9J1S8 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
TRIM49D1C9J1S8 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
TRIM49D1C9J1S8 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RNF19BPY-201ENST00000458209 1550 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 SCARNA15-201ENST00000607520 4325 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 MTND5P12-201ENST00000502851 1449 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RN7SKP124-201ENST00000364730 341 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 UBBP2-201ENST00000376781 231 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AL390774.1-201ENST00000411924 246 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RPL36AP10-201ENST00000421785 322 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RPS29P14-201ENST00000431518 171 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AC016724.1-201ENST00000453215 421 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RPL7P45-201ENST00000455851 743 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RNA5SP103-201ENST00000459503 118 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AL133445.1-201ENST00000467051 452 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RPL7P6-201ENST00000480903 738 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RN7SL441P-201ENST00000492388 296 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RNA5SP249-201ENST00000516127 99 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AC022826.1-201ENST00000519383 805 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AC135626.1-201ENST00000556983 435 ntBASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM49D1C9J1S8 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms